Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00037 ATGGGGGAGAACACGTACGGCATGCGCTCCACTCCCCAATTCTCGCCCAACTCCTTCCTTTCACCCCACACTCCTATCCTTCCCCTCGATTACCCGGCCTTCCTTCCCTCCACCAACTACTTTCCCCGCGATCGGATTCCTGCGTTCGGATCCGATGAACTGCTTTCCGATGCTGAACCAACAACTTCCATCACTCCAGATTTTCCTCTCGCTCAAGATGTTCCCAGCGTCATCAAGGCCAAAATTCTCTCTCATCCTACCTATCCTCGTTTGCTTCACGCTTATATTGACTGCCACAAGGTTGGAGCTCCGCCGGAGATAGCTTGTTTGTTGGAGGAAATCCGGCGAGAAAATGACAGTCATAAACAAAACGCCATGTCCACGTGCTTCGGAGGCGATCCCGAGCTCGATGAGTTCATGGAAACATACTGTGACATGCTGGTGAAGTATAAATCAGATCTGTCAAGGCCCTTTCGTGAAGCTTCCTCCTTCTTGAGTAACATCGAACTGCAACTTAGCAACCTCTGTGCTGGTGCCTCCACCAGAAGCTCCTCCAACGAGGATGCCATGTCATCAGATGATGAGCTTAACTGGGGAGAGAGGGAAGTACAAGATGCTCAAATGAGGTTAGAAGACAAAGGTCTTAAAGATATGCTCTTGAGTAGATTTGGCAGCCACATTGGAACCTTGAAGCTGGAATTTTCAAAGAAGAAGAAGAAAGGAAAACTACCTAAAGAAGGAAGGAAAGTACTGCTCGAGTGGTGGAATGTGCACTATAAATGGCCATATCCTACGGAAGCTGATAAGATGGCGCTGGCAGAGACAACAGGACTAGATCCGAAGCAAATTAACAATTGGTTCATAAATCAACGAAAGCGGCACTGGAAACCTTCTGAAAGTATGCAATTTGCAAGTATGGATGATGTGGGTGAACAATTATACGCTAGGCTGGACTCTTGA 960 47.71 MGENTYGMRSTPQFSPNSFLSPHTPILPLDYPAFLPSTNYFPRDRIPAFGSDELLSDAEPTTSITPDFPLAQDVPSVIKAKILSHPTYPRLLHAYIDCHKVGAPPEIACLLEEIRRENDSHKQNAMSTCFGGDPELDEFMETYCDMLVKYKSDLSRPFREASSFLSNIELQLSNLCAGASTRSSSNEDAMSSDDELNWGEREVQDAQMRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLLEWWNVHYKWPYPTEADKMALAETTGLDPKQINNWFINQRKRHWKPSESMQFASMDDVGEQLYARLDS 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 133814 144689 + CmoCh05G000370.1 Cmo05g00037 382172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00037 319 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 2 47 315 - -
Cmo05g00037 319 Pfam KNOX2 domain 130 176 IPR005541 GO:0003677|GO:0005634
Cmo05g00037 319 Gene3D - 233 307 - -
Cmo05g00037 319 SMART KNOX2_2 126 177 IPR005541 GO:0003677|GO:0005634
Cmo05g00037 319 SMART KNOX1_2 76 120 IPR005540 GO:0003677|GO:0005634
Cmo05g00037 319 SMART ELK_2 214 235 IPR005539 GO:0003677
Cmo05g00037 319 CDD homeodomain 248 298 IPR001356 GO:0003677
Cmo05g00037 319 Pfam ELK domain 215 235 IPR005539 GO:0003677
Cmo05g00037 319 Pfam KNOX1 domain 78 119 IPR005540 GO:0003677|GO:0005634
Cmo05g00037 319 ProSiteProfiles 'Homeobox' domain profile. 234 297 IPR001356 GO:0003677
Cmo05g00037 319 Pfam Homeobox KN domain 254 293 IPR008422 GO:0003677|GO:0006355
Cmo05g00037 319 SMART HOX_1 236 301 IPR001356 GO:0003677
Cmo05g00037 319 ProSitePatterns 'Homeobox' domain signature. 272 295 IPR017970 GO:0000981|GO:0006355
Cmo05g00037 319 SUPERFAMILY Homeodomain-like 235 306 IPR009057 -
Cmo05g00037 319 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 47 315 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00037 Cmo-Chr5:133814 Cmo11g00089 Cmo-Chr11:428955 3.78E-83 dispersed
Cmo18g00789 Cmo-Chr18:9414147 Cmo05g00037 Cmo-Chr5:133814 6.55E-136 wgd
Cmo04g01834 Cmo-Chr4:9211224 Cmo05g00037 Cmo-Chr5:133814 5.15E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9767 PF03791 KNOX2 9.90E-24 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00037 - - csv:101210523 491.115