Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00039 ATGGCGATCCAGCTTTATGTCTTATTTTCAGTCCTTTCTATTCTTCTGTTGCTCCCAACTTCGAGTATGGGGAAGCCAAGAGATCAAACTGTGAAAGTGATGTGCGGGAAAGAACTCGAGCACAACACCACGGCCTACGTCCCTAACTTTTTTGGTTCCATGGAAAAAGTTAGACAACAGATCCGAACTTCAGGATTTGGAACGGCCGGCACAGGAATAGGACTTGATGCCAGCTATGGGCTTGCCCAATGCCATGGAGATCTCTCCCCCCTCGAATGTGTGCTGTGTCATTCTCAAGCACGTACAGTGCTTCCCCAATGCTTCCCTTTCAATGGCGGCCGAACTTTCATCGATGGCTGCTTCATGAGGTTCGAAAACTATATCTTTTTTGATGAATATAAAGGACCCGAAGACACTGCAATTTGCGGGAACTTGACCCAAAATGACCCCAACTACAGACAAGCAGCCAAAGAGGCAGTGATGCAAGTAGTCAATGTTGCACCAGGCAACAGAGGCTTTGCGAAAGCTCGAGTGGCTGTGGCCGGAAGAGCAAATGAGTCCGCAGCTTACGCTCTGGGCCAGTGCTGGAGAAGTTTGAACCGCAGCTCTTGCAGATTATGTTTGCAAATTGCTTCTGCTTCAATGTTGTCATGTTTACCTCTATCCGAAGGGCGAGCACTGAACACAGGCTGCTTCATGAGATACTCGAACACAGACTTCCTCAATAAGGACATAAAAATTAGTTCCAGAGGTGCCACAAGAACCGAATTGATAGTTTCGGTCCTGAGTTCTGTTGTTGTTTTGATAATCGGAGGAGCAATTGGTGCTTATATCTGGAAGCACAGATATATACAAAATAAAAGAAAAGGAGGTTCAACTGATGTGAAGAAGTTAGCAAAAACTCTTCAAGATAGTAACTTGAACTTCAAGTACTCCACCCTTGAAAAAGCTACCAACAATTTCAGCCTCGATAACAAGATTGGACAAGGGGGGTTTGGCTCTGTTTATAAGGGAACTCTACCTGATGGAAGAGAGATTGCTGTTAAGAGATTCTTCTTTGATAACAGACATAGAGCAGCAGATTTCTACAATGAAGTAAACATGATCAGCAGTGTCGAACATAAAAATCTTGTAAGGTTGCTTGGATGCAGTTGTTCTGGACCTGAAAGCCTACTTGTTTATGAATTCCTACCAAACAAGAGTCTTGATCGCTTCATTTTTGATACCAAGAACAGTAAAGCTCTTGATTGGGATAAGAGATTTAACATCATCATTGGAACAGTTGAAGGTTTAATATATCTACATGAAAATCCAAAGATCAAAATTATACATAGAGATATAAAGGCCAGTAATATCTTGCTGGATCAAAAGCTCCAGGCGAAAATAGCAGATTTTGGATTAGCAAGGTCTTTCCAAGAAAACAAGAGCCATATCAGCACCGCTGTTGCAGGAACCCTAGGATATATGGCTCCGGAGTATCTAGCTTATGGTCAGTTATCAGAAAAGGCTGATGTCTATAGCTTTGGAGTACTTTTGTTAGAAATTGTTGCAGGATTGCAATACAATGGCATTCAAGTCTCCGGAAACATTGAAAGTCTGGTCACTGCTATGTGGAGACATTTCCAAGCAGGCACAGTTGAGAGGTTATTTGATCCAAATCTCAACCTTCAGAATCACTACAACAAGAAAGTAAAAGATGAGGTATTGAGAGTGGTGCACATAGGGCTCTTGTGCATCCAGGAGATTCCTTCTCTACGACCAACAATGTCGAAGATAATGCGAATGCTGACAATGGAGGAGGAAGAGCTCCTTCCTCCACCCACCAAACCACCCTTCATGGATGAGATGACCATGGAACTTGATGACTCATGCAAGGACTCACGATATTATTCCAATACGGAGGGCCCTTCTTCAACTGCTACGGTCAGCCATAGTGCTTTTTATCCCAGATAA 1953 43.16 MAIQLYVLFSVLSILLLLPTSSMGKPRDQTVKVMCGKELEHNTTAYVPNFFGSMEKVRQQIRTSGFGTAGTGIGLDASYGLAQCHGDLSPLECVLCHSQARTVLPQCFPFNGGRTFIDGCFMRFENYIFFDEYKGPEDTAICGNLTQNDPNYRQAAKEAVMQVVNVAPGNRGFAKARVAVAGRANESAAYALGQCWRSLNRSSCRLCLQIASASMLSCLPLSEGRALNTGCFMRYSNTDFLNKDIKISSRGATRTELIVSVLSSVVVLIIGGAIGAYIWKHRYIQNKRKGGSTDVKKLAKTLQDSNLNFKYSTLEKATNNFSLDNKIGQGGFGSVYKGTLPDGREIAVKRFFFDNRHRAADFYNEVNMISSVEHKNLVRLLGCSCSGPESLLVYEFLPNKSLDRFIFDTKNSKALDWDKRFNIIIGTVEGLIYLHENPKIKIIHRDIKASNILLDQKLQAKIADFGLARSFQENKSHISTAVAGTLGYMAPEYLAYGQLSEKADVYSFGVLLLEIVAGLQYNGIQVSGNIESLVTAMWRHFQAGTVERLFDPNLNLQNHYNKKVKDEVLRVVHIGLLCIQEIPSLRPTMSKIMRMLTMEEEELLPPPTKPPFMDEMTMELDDSCKDSRYYSNTEGPSSTATVSHSAFYPR 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 147272 150422 - CmoCh05G000390.1 Cmo05g00039 382174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00039 650 Gene3D - 139 240 IPR038408 -
Cmo05g00039 650 Gene3D - 28 129 IPR038408 -
Cmo05g00039 650 MobiDBLite consensus disorder prediction 629 650 - -
Cmo05g00039 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 442 454 IPR008271 GO:0004672|GO:0006468
Cmo05g00039 650 SUPERFAMILY Protein kinase-like (PK-like) 305 617 IPR011009 -
Cmo05g00039 650 ProSiteProfiles Gnk2-homologous domain profile. 28 129 IPR002902 -
Cmo05g00039 650 ProSiteProfiles Gnk2-homologous domain profile. 134 240 IPR002902 -
Cmo05g00039 650 Pfam Salt stress response/antifungal 48 127 IPR002902 -
Cmo05g00039 650 Pfam Salt stress response/antifungal 149 237 IPR002902 -
Cmo05g00039 650 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 6 630 - -
Cmo05g00039 650 ProSitePatterns Protein kinases ATP-binding region signature. 327 349 IPR017441 GO:0005524
Cmo05g00039 650 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 6 630 - -
Cmo05g00039 650 Gene3D Transferase(Phosphotransferase) domain 1 397 604 - -
Cmo05g00039 650 CDD STKc_IRAK 327 597 - -
Cmo05g00039 650 MobiDBLite consensus disorder prediction 626 650 - -
Cmo05g00039 650 Gene3D Phosphorylase Kinase; domain 1 282 396 - -
Cmo05g00039 650 SMART serkin_6 321 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g00039 650 Pfam Protein kinase domain 322 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g00039 650 ProSiteProfiles Protein kinase domain profile. 321 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00039 Cmo-Chr5:147272 Cmo07g00285 Cmo-Chr7:1395425 4.95E-100 dispersed
Cmo05g00039 Cmo-Chr5:147272 Cmo05g00040 Cmo-Chr5:150516 0 tandem
Cmo12g00019 Cmo-Chr12:116551 Cmo05g00039 Cmo-Chr5:147272 0 wgd
Cmo14g00677 Cmo-Chr14:3463304 Cmo05g00039 Cmo-Chr5:147272 1.23E-162 wgd
Cmo18g00787 Cmo-Chr18:9409551 Cmo05g00039 Cmo-Chr5:147272 7.55E-156 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74335 PF00069 Pkinase 1.10E-46 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00039 - - cmax:111492443 1257.66