Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00040 ATGAAGACTGGATCGCCACTTGTTCCCAGATGTGGGTTGTTGATTATCATCAGCTCTCTTCTGTTACTTGAAACATCGACAGTGGCAGACCCCAGATCCCAAACCGCGAAGATACTTTGTTCAACCGTGTTAGAGCATAATACAACGGCTTTTGTGCCCAATTTCGTGGGCACAATGCAAGTAATCAGTGACCAAATGCGAACTGGTGGTTTTGGAGTGGCACGTGTGGGTAACGGGCCGGACGCCAACTACGGACTCGCTCAATGTTACGGAGATTTGTCGCTGATGGATTGTGTGTTGTGTTACGCGGAAGCCCGTACTGTCCTTCCTCAATGCTTCCCTTTCAACGGCGGCCGGATTTTCCTGGACGGCTGCTTCATGAGGGCTGAGAATTACAGCTTTTATGAGGAATTTTCGGGGCCTCTTGACAGGGCTGTGTGCGGTAACAATTCCATCACCAACTCCGTTTATGGACAGTCGACCAGGCAGGCTGTGGCCCGTGCAGTCGAAACTGCACCCAACAATGGAGGGTATGCGAGAATTCAAGTGGCTCTCCCTGGAACCCCCAATGCCTCGGTTTACTTGTTGGCTCAGTGCTGGAGGAATCTGAATCGCAGCTCCTGCACTTCCTGTTTGCAAAACGCCTCTGCTTCTATCTTGAAATGCTTGCCTCGATCTGAAGCAAGAGCCCTCAACACAGGTTGTTTCATGAGATACTCTAATGTTGACTTCTTAAATGCAGAAGCTCAAGCTGCAAGGTCAAGAGGCACCATTGTAGCAATTGTAGTCTCACTGGTGAGCTCTGTTGCTGTTTTAGTCGTTGGAGTGTTGATTGGCATCTACATCTGGAATAACAGATATGTAAACAACAAACGAAGAGGTTCAAACGATGTAAACAAGATGGCAAAAACACTAAACAATAGCAGCTTGAATTTCAAGTACTCTACCCTTGAAAAGGCAACAGGGTCCTTTGCGGAGGCTAACAAGCTTGGACAAGGAGGATTTGGCACCGTTTATAAGGGAGTTCTGTCGGATGGAAGAGAGATAGCTGTGAAGAGGCTGTTCTTCAATAACAAACATAGAGCAGCAGATTTTTACAATGAAGTCAACATAATTAGCAGTGTGGAGCACAAAAATTTAGTGAGGTTGCTTGGGTGTAGTTGCTCTGGACCTGAAAGCCTGCTGGTGTATGAATTCCTTGCCAACAGGAGTCTGGACCGCTTCATTTTTGATGGAGAAAGAGGTAAATCACTGAATTGGGAGAAGAGGTTTGAGATTATTGTGGGAACGGTTGAAGGGTTGGCTTACCTGCATGAGAACTCAAAAAACAAGATCATTCACAGAGACATCAAGGCTAGTAACATACTGCTGGACTCAAGGCTTCGAGCTAAAATTGCTGATTTTGGATTAGCTAGATCCTTTGAAGAAGATGTGAGCCACATCAGCACTGCCATTGCTGGAACCTTGGGATATTTGGCGCCAGAGTACTTGGCTCATGGGCAGCTAACGGAGAAGGCGGATGTGTACAGTTTTGGTGTGGTGTTGCTGGAGACGGTGACCGGGAGACAGAACAGCAGGAGCAAAGCCTCGGACTACTTGGAAAGCATAGTACTGATTGCATGGAAGCACTTTCAAGCGGGAACAATGGAAAGGATATACGACCCAAACCTTATGGTTGAAGGAGATGGAAGCATGAAAGAGGAGATATTGAGAGTGGTGCAGATCGGGCTTCTTTGCACACAGGAGAGCGCATCTCTGCGACCCACAATGTCCAAGGTACTGCAGATGCTGATGAAGAAGGAAGAGAAGCTTCCGGCGCCGACCAACCCACCGTTCATGGACGAGAGGACGATGGAACTGAACGACACCAGTGAGGACCCATCCTACTTCAACATGACGGAAGCTTCTTCCTCAGCGGCCACCGTGACCCACAGTTCATTTCATCCCAGAAAAGAAAGAGAGAGGAAAGCCGCCGTTGTTGAATCTTTTGACTGGAGATGGTGTCGTGAGGTCTTGTTTCTTACGCTCAGGGACTCTGCGTTTTTCCAGGATGTTTTCTCCAGCTCCTCCTCCTCCTCCTTCCTCGTCTTGACTTCTTCTCAATTATAA 2109 47.84 MKTGSPLVPRCGLLIIISSLLLLETSTVADPRSQTAKILCSTVLEHNTTAFVPNFVGTMQVISDQMRTGGFGVARVGNGPDANYGLAQCYGDLSLMDCVLCYAEARTVLPQCFPFNGGRIFLDGCFMRAENYSFYEEFSGPLDRAVCGNNSITNSVYGQSTRQAVARAVETAPNNGGYARIQVALPGTPNASVYLLAQCWRNLNRSSCTSCLQNASASILKCLPRSEARALNTGCFMRYSNVDFLNAEAQAARSRGTIVAIVVSLVSSVAVLVVGVLIGIYIWNNRYVNNKRRGSNDVNKMAKTLNNSSLNFKYSTLEKATGSFAEANKLGQGGFGTVYKGVLSDGREIAVKRLFFNNKHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEFLANRSLDRFIFDGERGKSLNWEKRFEIIVGTVEGLAYLHENSKNKIIHRDIKASNILLDSRLRAKIADFGLARSFEEDVSHISTAIAGTLGYLAPEYLAHGQLTEKADVYSFGVVLLETVTGRQNSRSKASDYLESIVLIAWKHFQAGTMERIYDPNLMVEGDGSMKEEILRVVQIGLLCTQESASLRPTMSKVLQMLMKKEEKLPAPTNPPFMDERTMELNDTSEDPSYFNMTEASSSAATVTHSSFHPRKERERKAAVVESFDWRWCREVLFLTLRDSAFFQDVFSSSSSSSFLVLTSSQL 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 150516 153742 - CmoCh05G000400.1 Cmo05g00040 382175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00040 702 SUPERFAMILY Protein kinase-like (PK-like) 309 632 IPR011009 -
Cmo05g00040 702 SMART serkin_6 324 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g00040 702 Gene3D - 143 244 IPR038408 -
Cmo05g00040 702 Gene3D - 33 134 IPR038408 -
Cmo05g00040 702 ProSiteProfiles Gnk2-homologous domain profile. 139 244 IPR002902 -
Cmo05g00040 702 CDD STKc_IRAK 330 599 - -
Cmo05g00040 702 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Cmo05g00040 702 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Cmo05g00040 702 Gene3D Transferase(Phosphotransferase) domain 1 400 609 - -
Cmo05g00040 702 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 14 631 - -
Cmo05g00040 702 ProSiteProfiles Protein kinase domain profile. 324 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g00040 702 Pfam Protein kinase domain 325 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g00040 702 Pfam Salt stress response/antifungal 51 132 IPR002902 -
Cmo05g00040 702 Pfam Salt stress response/antifungal 150 241 IPR002902 -
Cmo05g00040 702 Gene3D Phosphorylase Kinase; domain 1 285 399 - -
Cmo05g00040 702 ProSiteProfiles Gnk2-homologous domain profile. 33 134 IPR002902 -
Cmo05g00040 702 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 14 631 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00040 Cmo-Chr5:150516 Cmo12g00019 Cmo-Chr12:116551 0 dispersed
Cmo05g00039 Cmo-Chr5:147272 Cmo05g00040 Cmo-Chr5:150516 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74336 PF00069 Pkinase 8.00E-47 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00040 - - cmax:111492443 1276.92