Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo05g00053 | ATGTCAAAACCCTGGGGTGGAATCGGAGCCTGGGCCGCTGATGCCGAGCGTGCTGAGGATGAGGAGCGAGAGGCGCAAGCTGCTGCGGCCGCTTCCCAAGCAGAATCCAAGAATTTCCCTAGCCTTAGGGAAGCCGTCAGCACCAAGCCCAAGAAAAAGAAGATGTCGCTGTCGGAATTCACTATGGGGACCTTGACGGGTCATGGCGCCGGCGGTAGGCTAACGGACAGCCAGGGCTTGACCCCGGAGGAGATGATTCGGCTTCCAACTGGTCCAAAAGACCGCTCTGGTGAGGAAGTACGTTCTGGCCGGCTCGGTGGGGGATTTCCCACTTATGATCGCCAAGGTATGTCTGCTGGTCGATATCGAGACCGTGATGATGGCGATGGGTCCTGGGGTGGTGGTCGACGATCTTATGGCGGGTTTGATGAGGAACGCAGGGGCTCATCTCCTAGGGCTTCCAATTTCGATCAACCTTCGAGGGCTGACGAGGTGGATAATTGGGCAATGACGAAGAAATCTCCCACATTGGATTCAGGTCGACAAAATAGGTATGGGTCGCTAGGCGGTGGTGTGGGTGGAATTGCATCTAGGGCAGACGAGGTCGATAACTGGGCACGTGAGAAAAAGCCTATTCCATCGAGATCCTCCACATTCGGTTCCAGTTATCGTGAGGCGAATGAGCCTGATCGATGGGGTAGAGGCCGTTCACGTGATAGTGTCACAGAACGACCCCGATTAGTGTTGGATCCACCCAAAGGTAATGTCGTAACAAATGAAGCAGCAAGGGCGAACAAGCCAAACCCTTTTGGAGCAGCAAGGCCGAGAGAGGAGGTTTTGGCCGAGAAGGGATTGGATTGGAAGAAGCTGGATACAGAAATTGAGGCCAAAAAAACCAGTAGGCCAACTAGTGCTCACTCTAGCAGGCCTTCGAGTGCTCAATCCAGCCGTTCGGAGGGTCCAGGATTACAGGGCGTAGAAAATGTGGTGAAGCCGAGGCCAAAAGTCAATCCATTTGGGGATGCCAAACCTAGGGAGGTTTTGCTGGAGGAACGTGGCAAGGATTGGCGAAAGATAGATCTGCAACTTGAGCATCGTGCTGTTGACAGGCCTGAAACAGAAGAGGAAAAGATGTTGAAGGAGGAAATTAATGTTCTAAGAAAGGAACTTGAGGAAGGCTTACACCTGAATACCAACAAAGAATCGGTGCAAGAATCTGCTGGAGAGATGCAAAACCTGCGTGACAGAATAAATAAAAAAGAACGTGAACTGGAGACGTTGATCCTTGATTTGGATGATAAAGTTCGGTTTGGGAAGAAAGCCACTGAAAGACCTGGCTCTGGAGCAGGCAAGGCTGCTGCCTTTCAAGAAAGACCGCCTTCTCAAGGATCCTTTGATGAGTCCAGAAGTTTTGAGTCTGTGGACAGACCTCGATCACGAGGCACTACAGATGTATGGAGTAGGTCTGCTGATGATAGAAAGCCAATCCAAGGTGCCAGAGATGGAGGATTTTTGGGTAACAGAAACATAGAGAGGTCGAGGGATAGATGGTAA | 1554 | 51.42 | MSKPWGGIGAWAADAERAEDEEREAQAAAAASQAESKNFPSLREAVSTKPKKKKMSLSEFTMGTLTGHGAGGRLTDSQGLTPEEMIRLPTGPKDRSGEEVRSGRLGGGFPTYDRQGMSAGRYRDRDDGDGSWGGGRRSYGGFDEERRGSSPRASNFDQPSRADEVDNWAMTKKSPTLDSGRQNRYGSLGGGVGGIASRADEVDNWAREKKPIPSRSSTFGSSYREANEPDRWGRGRSRDSVTERPRLVLDPPKGNVVTNEAARANKPNPFGAARPREEVLAEKGLDWKKLDTEIEAKKTSRPTSAHSSRPSSAQSSRSEGPGLQGVENVVKPRPKVNPFGDAKPREVLLEERGKDWRKIDLQLEHRAVDRPETEEEKMLKEEINVLRKELEEGLHLNTNKESVQESAGEMQNLRDRINKKERELETLILDLDDKVRFGKKATERPGSGAGKAAAFQERPPSQGSFDESRSFESVDRPRSRGTTDVWSRSADDRKPIQGARDGGFLGNRNIERSRDRW | 517 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 191618 | 197817 | - | CmoCh05G000530.1 | Cmo05g00053 | 382188 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo05g00053 | 517 | MobiDBLite | consensus disorder prediction | 1 | 344 | - | - | |
| Cmo05g00053 | 517 | Coils | Coil | 15 | 35 | - | - | |
| Cmo05g00053 | 517 | MobiDBLite | consensus disorder prediction | 438 | 517 | - | - | |
| Cmo05g00053 | 517 | MobiDBLite | consensus disorder prediction | 469 | 498 | - | - | |
| Cmo05g00053 | 517 | MobiDBLite | consensus disorder prediction | 118 | 132 | - | - | |
| Cmo05g00053 | 517 | Pfam | Plant specific eukaryotic initiation factor 4B | 1 | 503 | IPR010433 | GO:0003743 | |
| Cmo05g00053 | 517 | MobiDBLite | consensus disorder prediction | 303 | 322 | - | - | |
| Cmo05g00053 | 517 | MobiDBLite | consensus disorder prediction | 276 | 302 | - | - | |
| Cmo05g00053 | 517 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B1 | 1 | 517 | - | - | |
| Cmo05g00053 | 517 | Coils | Coil | 403 | 430 | - | - | |
| Cmo05g00053 | 517 | MobiDBLite | consensus disorder prediction | 227 | 246 | - | - | |
| Cmo05g00053 | 517 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B | 1 | 517 | IPR010433 | GO:0003743 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo05g00053 | Cmo-Chr5:191618 | Cmo11g01728 | Cmo-Chr11:12225354 | 1.57E-45 | dispersed | |
| Cmo12g00028 | Cmo-Chr12:163125 | Cmo05g00053 | Cmo-Chr5:191618 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo05g00053 | - | - | csv:101206526 | 865.529 |