Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo05g00062 | ATGGAAATTCCAAGTTTTCTTCCCATAATAACCTTCACTCTTCTTCTCCAAATGTGCGCCATTTCATCTTCTCCAGTCGCCGACCCTCAACTAGTCGTCCAAGAAGTTCTCTCGAGCATCAACAATGCAACAACAAGAAGGAATTTGGGGTTCCTTTCCTGTGGAACTGGAAACCCAATAGACGACTGTTGGCGGTGCGACCCCAATTGGGAGAAGAATCGAAAGCGTCTAGCCGACTGCGGCATTGGGTTCGGGAAGCGAGCCATCGGCGGCAAAAACGGGAAATTCTACGTAGTCACTGACCCATCCGACAAGGACGTGGTGAACCCAAAACCAGGCACTCTTCGTCACGCCGTAATCCAAAAGGAACCCTTATGGATCACCTTTAAACGCGACATGGTCATCAAATTAAAAGCAGAGCTGCTGATGAACTCTTTCAAAACCATCGACGGTCGGGGTGTGTCGGTCCACATAGCCGGCGGGCCTTGCATTACAATTCAGTATGTGACCAACATTATCATCCACGGCATCAACATTCACGACTGCAAGCAAGGTGGGAACACGTACGTTAGAGATTCGCCGGAGCATTATGGTTGGAGGACTCTGTCGGACGGCGATGGGGTTTCGATATTTGGAGGCAGCCATGTTTGGATCGACCATTGCTCTTTGTCGAATTGTCGTGATGGGCTGATTGATGCGATTCATGGGTCTACGGCCATCACTGTTTCCAACAATTACATGACCCACCATAACAAAGTTATGCTTTTAGGACACAGTGATTCGTATACTCAAGACAAGAACATGCAAGTCACCATTGCTTTCAACCATTTTGGTGAGGGCCTTGTTCAGAGAATGCCACGATGCCGGCATGGGTACTTTCATGTGGTGAACAATGACTACACTCATTGGATAATGTACGCCATTGGTGGAAGTGCTTCCCCTACCATCAATAGCCAAGGGAACAGATACCTTGCTCCCAATAACCGAGATAGGAAAGAGGTCACAAAGCGGGAGGATGCACCACAAAGCAAATGGAAGAATTGGAATTGGAGGTCAAGTGGAGATTTGATGTTGAATGGAGCATTCTTCACGAGATCGGGAGCTGGATCGTCGTCTAGCTACGCGAGGGCGTCGAGCTTGAGTGCGAAGTCGTCGTCGTTGGTGAGTACGATGACGGCGGGAGCAGGGGTGCTGCGGTGCCGAAAGGGGTCCCGGTGTTAG | 1221 | 49.63 | MEIPSFLPIITFTLLLQMCAISSSPVADPQLVVQEVLSSINNATTRRNLGFLSCGTGNPIDDCWRCDPNWEKNRKRLADCGIGFGKRAIGGKNGKFYVVTDPSDKDVVNPKPGTLRHAVIQKEPLWITFKRDMVIKLKAELLMNSFKTIDGRGVSVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNTYVRDSPEHYGWRTLSDGDGVSIFGGSHVWIDHCSLSNCRDGLIDAIHGSTAITVSNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPNNRDRKEVTKREDAPQSKWKNWNWRSSGDLMLNGAFFTRSGAGSSSSYARASSLSAKSSSLVSTMTAGAGVLRCRKGSRC | 406 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 229530 | 231357 | - | CmoCh05G000620.1 | Cmo05g00062 | 382197 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo05g00062 | 406 | SUPERFAMILY | Pectin lyase-like | 43 | 400 | IPR011050 | - | |
Cmo05g00062 | 406 | PANTHER | PECTATE LYASE | 10 | 403 | - | - | |
Cmo05g00062 | 406 | Gene3D | - | 57 | 399 | IPR012334 | - | |
Cmo05g00062 | 406 | Pfam | Pectate lyase | 165 | 321 | IPR002022 | - | |
Cmo05g00062 | 406 | PRINTS | Pollen allergen Amb family signature | 80 | 97 | IPR018082 | - | |
Cmo05g00062 | 406 | PRINTS | Pollen allergen Amb family signature | 104 | 129 | IPR018082 | - | |
Cmo05g00062 | 406 | PRINTS | Pollen allergen Amb family signature | 140 | 156 | IPR018082 | - | |
Cmo05g00062 | 406 | PRINTS | Pollen allergen Amb family signature | 204 | 225 | IPR018082 | - | |
Cmo05g00062 | 406 | PRINTS | Pollen allergen Amb family signature | 284 | 303 | IPR018082 | - | |
Cmo05g00062 | 406 | PRINTS | Pollen allergen Amb family signature | 306 | 325 | IPR018082 | - | |
Cmo05g00062 | 406 | PRINTS | Pollen allergen Amb family signature | 348 | 372 | IPR018082 | - | |
Cmo05g00062 | 406 | PRINTS | Pollen allergen Amb family signature | 377 | 400 | IPR018082 | - | |
Cmo05g00062 | 406 | SMART | amb_all | 132 | 329 | IPR002022 | - | |
Cmo05g00062 | 406 | PANTHER | PECTATE LYASE 18-RELATED | 10 | 403 | IPR045032 | GO:0030570 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g00062 | Cmo-Chr5:229530 | Cmo13g00799 | Cmo-Chr13:7568287 | 0 | dispersed | |
Cmo05g00062 | Cmo-Chr5:229530 | Cmo18g00180 | Cmo-Chr18:1237313 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo05g00062 | K01728 | - | csv:101208076 | 733.791 |