Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00062 ATGGAAATTCCAAGTTTTCTTCCCATAATAACCTTCACTCTTCTTCTCCAAATGTGCGCCATTTCATCTTCTCCAGTCGCCGACCCTCAACTAGTCGTCCAAGAAGTTCTCTCGAGCATCAACAATGCAACAACAAGAAGGAATTTGGGGTTCCTTTCCTGTGGAACTGGAAACCCAATAGACGACTGTTGGCGGTGCGACCCCAATTGGGAGAAGAATCGAAAGCGTCTAGCCGACTGCGGCATTGGGTTCGGGAAGCGAGCCATCGGCGGCAAAAACGGGAAATTCTACGTAGTCACTGACCCATCCGACAAGGACGTGGTGAACCCAAAACCAGGCACTCTTCGTCACGCCGTAATCCAAAAGGAACCCTTATGGATCACCTTTAAACGCGACATGGTCATCAAATTAAAAGCAGAGCTGCTGATGAACTCTTTCAAAACCATCGACGGTCGGGGTGTGTCGGTCCACATAGCCGGCGGGCCTTGCATTACAATTCAGTATGTGACCAACATTATCATCCACGGCATCAACATTCACGACTGCAAGCAAGGTGGGAACACGTACGTTAGAGATTCGCCGGAGCATTATGGTTGGAGGACTCTGTCGGACGGCGATGGGGTTTCGATATTTGGAGGCAGCCATGTTTGGATCGACCATTGCTCTTTGTCGAATTGTCGTGATGGGCTGATTGATGCGATTCATGGGTCTACGGCCATCACTGTTTCCAACAATTACATGACCCACCATAACAAAGTTATGCTTTTAGGACACAGTGATTCGTATACTCAAGACAAGAACATGCAAGTCACCATTGCTTTCAACCATTTTGGTGAGGGCCTTGTTCAGAGAATGCCACGATGCCGGCATGGGTACTTTCATGTGGTGAACAATGACTACACTCATTGGATAATGTACGCCATTGGTGGAAGTGCTTCCCCTACCATCAATAGCCAAGGGAACAGATACCTTGCTCCCAATAACCGAGATAGGAAAGAGGTCACAAAGCGGGAGGATGCACCACAAAGCAAATGGAAGAATTGGAATTGGAGGTCAAGTGGAGATTTGATGTTGAATGGAGCATTCTTCACGAGATCGGGAGCTGGATCGTCGTCTAGCTACGCGAGGGCGTCGAGCTTGAGTGCGAAGTCGTCGTCGTTGGTGAGTACGATGACGGCGGGAGCAGGGGTGCTGCGGTGCCGAAAGGGGTCCCGGTGTTAG 1221 49.63 MEIPSFLPIITFTLLLQMCAISSSPVADPQLVVQEVLSSINNATTRRNLGFLSCGTGNPIDDCWRCDPNWEKNRKRLADCGIGFGKRAIGGKNGKFYVVTDPSDKDVVNPKPGTLRHAVIQKEPLWITFKRDMVIKLKAELLMNSFKTIDGRGVSVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNTYVRDSPEHYGWRTLSDGDGVSIFGGSHVWIDHCSLSNCRDGLIDAIHGSTAITVSNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPNNRDRKEVTKREDAPQSKWKNWNWRSSGDLMLNGAFFTRSGAGSSSSYARASSLSAKSSSLVSTMTAGAGVLRCRKGSRC 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 229530 231357 - CmoCh05G000620.1 Cmo05g00062 382197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00062 406 SUPERFAMILY Pectin lyase-like 43 400 IPR011050 -
Cmo05g00062 406 PANTHER PECTATE LYASE 10 403 - -
Cmo05g00062 406 Gene3D - 57 399 IPR012334 -
Cmo05g00062 406 Pfam Pectate lyase 165 321 IPR002022 -
Cmo05g00062 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Cmo05g00062 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Cmo05g00062 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Cmo05g00062 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Cmo05g00062 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Cmo05g00062 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Cmo05g00062 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Cmo05g00062 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Cmo05g00062 406 SMART amb_all 132 329 IPR002022 -
Cmo05g00062 406 PANTHER PECTATE LYASE 18-RELATED 10 403 IPR045032 GO:0030570
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00062 Cmo-Chr5:229530 Cmo13g00799 Cmo-Chr13:7568287 0 dispersed
Cmo05g00062 Cmo-Chr5:229530 Cmo18g00180 Cmo-Chr18:1237313 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00062 K01728 - csv:101208076 733.791