Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00070 ATGGTCATGGAAAATGGCTTCTCTTCTCCTCGTAGCGATGCGTTTCCCGTCGGTCTTCGTGTTCTTGTCGTTGATGATGATCCAACATGGTTGAGAATCCTGGAAAAGATGCTCAAGAAGTGCTCCTATGAAGTGACAACATGTTGTTTAGCAAGGGAGGCTCTAAGCCTGCTTAGGGAGAGAAAAGATGGATACGATATCGTAATCAGCGACGTAAACATGCCTGATATGGATGGTTTTAAACTCCTTGAGCATGTGGGATTGGAAATGGACCTGCCAGTTATCATGATGTCAGTTGATGGCGAAACAAGCCGAGTAATGAAAGGGGTTCAACACGGGGCTTGTGATTATCTTCTAAAACCGATACGAATGAAAGAACTTCGAAACATATGGCAGCACGTATTGCGAAAGAAGATACAAGAAGGAAGAGATATTGAAGGACATGATGTTCTTGAAGGTATCCAGATTCTAAGAAATGGATCAGATAGGTACGATGATAGCCAGTTCCTGAGAGGAGAGGAACTATTTTCACTGAGAAAAAGAAAAGATATTGATAAGCATGAAGACAGAGAGTTTTGTGACACTTCTTCAACAAAGAAAGCCAGAGTTGTCTGGTCGGTTGATCTACACCAGAAGTTTGTCAAAGCAGTAGACCATATAGGTTTTGACAAAGTTGGGCCTAAAAAGATTCTTGATCTGATGAATGTTCCATGGCTGACTAGAGAAAATGTGGCTAGCCACTTGCAGAAATATCGCCTCTATTTGAGTAGACTGCAGAAAGAAAATGACCCAAAAGTTTGCTTTGTTGTTGGGATGAAACATACCGATTCGTGTTCGAAGGATCGAGAGGGGAACTTCAGCCTTTGTAGCTCGTTGGCCGGGCCACAAACTGATGTGACAAACAGCAGCTTCAGTTTTTCAGGTGATAACTTCCTTCTGCAGAATGATTCATCAGAGCCAAAAAGAGCTGCTGCTGCTGCTGCTGCTGCTGCTAGGAGTGTTCCTGAACCAATAAAGCTTGCAGCCTTTGATCCCAGCAAGCGAACCTGTTACCCTTGGGTTGATGCTCCAGAAACAAAGTTCAAACAAGAAATCAAGCCAGTTGTGCATTCAGAAGGAGATTTCAGTCAGTTCCCTGCAACGGTTCCACCGCACCACGTTCAAATCGACCAACTACAATCGATTTCGTCGATTAGTTCTGAACAGTCAGCAACAGAGAAAGATATAGCAAGCTCCATTGAAAGTAAGCCTATGTATTCTGAGGAGTGTAGCCAACAGATGGTCCATGTAAATCTACCAAAAGTTGCAACTGACCCCAGTTCAACTACTACTGCTGCTGCTGCTGCTACTACATTGGGAAAGAAAAACCAGAGCTTAAATCTTAGCAGCATTTCAACTGATATAGGAAGTGGGTTACCCTTTGAAACCTTTGATGAAGAGTTGCAGGGCTATCTGCTTGAAGATGGGTGCTATCCAAAGAACCTTGATCATCAGCAGATCATAGAGTTTCCAGATTATGGTGATCCAGGCCTTTTCACTGAAGTTCCTGCTTACCTTTACGATGCAATGAGGTTTGGCTATGAGTACTCCTATGACCCAACTGAGTATTATCCGGTGATAGATGAAGGCCTATTTATTGCATGA 1644 43.25 MVMENGFSSPRSDAFPVGLRVLVVDDDPTWLRILEKMLKKCSYEVTTCCLAREALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKKIQEGRDIEGHDVLEGIQILRNGSDRYDDSQFLRGEELFSLRKRKDIDKHEDREFCDTSSTKKARVVWSVDLHQKFVKAVDHIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDPKVCFVVGMKHTDSCSKDREGNFSLCSSLAGPQTDVTNSSFSFSGDNFLLQNDSSEPKRAAAAAAAAARSVPEPIKLAAFDPSKRTCYPWVDAPETKFKQEIKPVVHSEGDFSQFPATVPPHHVQIDQLQSISSISSEQSATEKDIASSIESKPMYSEECSQQMVHVNLPKVATDPSSTTTAAAAATTLGKKNQSLNLSSISTDIGSGLPFETFDEELQGYLLEDGCYPKNLDHQQIIEFPDYGDPGLFTEVPAYLYDAMRFGYEYSYDPTEYYPVIDEGLFIA 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 259045 261822 + CmoCh05G000700.1 Cmo05g00070 382205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00070 547 Pfam Response regulator receiver domain 21 130 IPR001789 GO:0000160
Cmo05g00070 547 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 428 - -
Cmo05g00070 547 SUPERFAMILY CheY-like 18 143 IPR011006 -
Cmo05g00070 547 Gene3D - 196 259 - -
Cmo05g00070 547 ProSiteProfiles Response regulatory domain profile. 20 135 IPR001789 GO:0000160
Cmo05g00070 547 Pfam Myb-like DNA-binding domain 202 252 IPR001005 -
Cmo05g00070 547 CDD REC_typeB_ARR-like 21 135 - -
Cmo05g00070 547 PANTHER TWO-COMPONENT RESPONSE REGULATOR 4 428 IPR045279 GO:0009736
Cmo05g00070 547 SUPERFAMILY Homeodomain-like 198 257 IPR009057 -
Cmo05g00070 547 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 200 253 IPR006447 GO:0003677
Cmo05g00070 547 SMART REC_2 19 131 IPR001789 GO:0000160
Cmo05g00070 547 Gene3D - 19 183 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00070 Cmo-Chr5:259045 Cmo08g01225 Cmo-Chr8:7770459 2.94E-97 dispersed
Cmo05g00070 Cmo-Chr5:259045 Cmo12g00037 Cmo-Chr12:209888 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9769 PF00072 Response_reg 1.10E-24 CL0304 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00070 - K14491 csv:101204370 857.44