Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00075 ATGTACTTGTCTGATAAGCCTCGCCCAATCGATATTTACAAGGAAGAAGGTAGCAGAGATATGATGATCGAGGTCGCCTCCAATGGCGACCACCATATTCAACCTCATCAGCCACAGCCGACTCATCAGCAGCACCAAATGATGCTCGGCGATAGCAGTGGTGAGGATCATGAAGTCAAGGCTCCGAAGAAGCGGGCGGAGACCTGGGTTCAGGATGAGACTCGAAGCTTAATTTCCCTACGCCGGGAGATGGATGGTTTGTTCAATACCTCGAAATCCAACAAGCATTTGTGGGAGCAGATATCGGCTAAGATGAGGGAAAGGGGCTTTGATCGCTCTCCGACTATGTGTACTGACAAATGGAGGAACTTGCTCAAGGAGTTCAAGAAGGCAAAGCACCATGATAGGGGAAGTGGCTCTGCTAAGATGTCGTATTACAAGGAGATTGAAGAAATTTTGAAGGAGAGAAGCAAAAGTACGCAGTACAAGAGCCCCACGCCACCCAAGATTGATTCATATATTCAATTCGCGGACAAAGATAGAAGTTTCGAATTGCTATTTTTGGGGCCTGCATTCTTTAAGTCTGTTGAATATGATGTGCAAATAGTAGGAATAGAGGATAATGGTCTAACGTTCGGACCCGTTGAAGGTGGCAGGCCTTCACTCAATCTTGAAAGACAGCTAGATCATGATGGACATCCCCTTGCCATCACAGCAGCTGATGCAGTTGCTGCAACGGGCATTCCACCTTGGAATTGGAGAGAGGCACCCGGAAATGATGGGGAGAGTCAGGCATTTGGCGGGAGAGTAATATCAGTCAAGTGGGGGGACTACACAAGAAGAATCGGTATTGATGGCACCTCAGAGGCCATCAAAGAGGCAATCAAATCTGCATTCAGGTTGAGAACTAAACGTGCATTTTGGTTAGAGGATGAGGACCAGGTTATCAGAAGTCTGGACAGGGACATGCCTTTAGGAAACTACACTCTTCACCTTGATGAAGGGTTGGCTGTGAAAATCTGCCTCTATGATGAATCTGATCACTTACCGGTACATACCGAAGAAAAAATATTTTACATTGAAGAAGATTACCGAGATTTTTTAACTCGTCGGGGCTGGACATGTCTTCGGGAGTTTGATGGGTATAGAAACATCGATACTATGGATGATCTTCGTCCTGGTGCAATATACCGCGGTATAAGTTGA 1206 46.19 MYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQPQPTHQQHQMMLGDSSGEDHEVKAPKKRAETWVQDETRSLISLRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDKWRNLLKEFKKAKHHDRGSGSAKMSYYKEIEEILKERSKSTQYKSPTPPKIDSYIQFADKDRSFELLFLGPAFFKSVEYDVQIVGIEDNGLTFGPVEGGRPSLNLERQLDHDGHPLAITAADAVAATGIPPWNWREAPGNDGESQAFGGRVISVKWGDYTRRIGIDGTSEAIKEAIKSAFRLRTKRAFWLEDEDQVIRSLDRDMPLGNYTLHLDEGLAVKICLYDESDHLPVHTEEKIFYIEEDYRDFLTRRGWTCLREFDGYRNIDTMDDLRPGAIYRGIS 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 292932 296821 + CmoCh05G000750.1 Cmo05g00075 382210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00075 401 MobiDBLite consensus disorder prediction 34 50 - -
Cmo05g00075 401 Pfam Myb/SANT-like DNA-binding domain 68 152 IPR044822 -
Cmo05g00075 401 ProSiteProfiles Myb-like domain profile. 61 125 IPR001005 -
Cmo05g00075 401 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-4 5 190 - -
Cmo05g00075 401 MobiDBLite consensus disorder prediction 34 67 - -
Cmo05g00075 401 Gene3D - 69 131 - -
Cmo05g00075 401 PANTHER - 204 400 - -
Cmo05g00075 401 SMART sant 65 127 IPR001005 -
Cmo05g00075 401 MobiDBLite consensus disorder prediction 51 67 - -
Cmo05g00075 401 CDD GT1 67 132 - -
Cmo05g00075 401 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-4 204 400 - -
Cmo05g00075 401 PANTHER - 5 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00075 Cmo-Chr5:292932 Cmo06g00219 Cmo-Chr6:1181729 1.89E-12 dispersed
Cmo12g00042 Cmo-Chr12:230221 Cmo05g00075 Cmo-Chr5:292932 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9770 PF13837 Myb_DNA-bind_4 2.70E-21 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00075 - - csv:101222888 688.337