Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo05g00075 | ATGTACTTGTCTGATAAGCCTCGCCCAATCGATATTTACAAGGAAGAAGGTAGCAGAGATATGATGATCGAGGTCGCCTCCAATGGCGACCACCATATTCAACCTCATCAGCCACAGCCGACTCATCAGCAGCACCAAATGATGCTCGGCGATAGCAGTGGTGAGGATCATGAAGTCAAGGCTCCGAAGAAGCGGGCGGAGACCTGGGTTCAGGATGAGACTCGAAGCTTAATTTCCCTACGCCGGGAGATGGATGGTTTGTTCAATACCTCGAAATCCAACAAGCATTTGTGGGAGCAGATATCGGCTAAGATGAGGGAAAGGGGCTTTGATCGCTCTCCGACTATGTGTACTGACAAATGGAGGAACTTGCTCAAGGAGTTCAAGAAGGCAAAGCACCATGATAGGGGAAGTGGCTCTGCTAAGATGTCGTATTACAAGGAGATTGAAGAAATTTTGAAGGAGAGAAGCAAAAGTACGCAGTACAAGAGCCCCACGCCACCCAAGATTGATTCATATATTCAATTCGCGGACAAAGATAGAAGTTTCGAATTGCTATTTTTGGGGCCTGCATTCTTTAAGTCTGTTGAATATGATGTGCAAATAGTAGGAATAGAGGATAATGGTCTAACGTTCGGACCCGTTGAAGGTGGCAGGCCTTCACTCAATCTTGAAAGACAGCTAGATCATGATGGACATCCCCTTGCCATCACAGCAGCTGATGCAGTTGCTGCAACGGGCATTCCACCTTGGAATTGGAGAGAGGCACCCGGAAATGATGGGGAGAGTCAGGCATTTGGCGGGAGAGTAATATCAGTCAAGTGGGGGGACTACACAAGAAGAATCGGTATTGATGGCACCTCAGAGGCCATCAAAGAGGCAATCAAATCTGCATTCAGGTTGAGAACTAAACGTGCATTTTGGTTAGAGGATGAGGACCAGGTTATCAGAAGTCTGGACAGGGACATGCCTTTAGGAAACTACACTCTTCACCTTGATGAAGGGTTGGCTGTGAAAATCTGCCTCTATGATGAATCTGATCACTTACCGGTACATACCGAAGAAAAAATATTTTACATTGAAGAAGATTACCGAGATTTTTTAACTCGTCGGGGCTGGACATGTCTTCGGGAGTTTGATGGGTATAGAAACATCGATACTATGGATGATCTTCGTCCTGGTGCAATATACCGCGGTATAAGTTGA | 1206 | 46.19 | MYLSDKPRPIDIYKEEGSRDMMIEVASNGDHHIQPHQPQPTHQQHQMMLGDSSGEDHEVKAPKKRAETWVQDETRSLISLRREMDGLFNTSKSNKHLWEQISAKMRERGFDRSPTMCTDKWRNLLKEFKKAKHHDRGSGSAKMSYYKEIEEILKERSKSTQYKSPTPPKIDSYIQFADKDRSFELLFLGPAFFKSVEYDVQIVGIEDNGLTFGPVEGGRPSLNLERQLDHDGHPLAITAADAVAATGIPPWNWREAPGNDGESQAFGGRVISVKWGDYTRRIGIDGTSEAIKEAIKSAFRLRTKRAFWLEDEDQVIRSLDRDMPLGNYTLHLDEGLAVKICLYDESDHLPVHTEEKIFYIEEDYRDFLTRRGWTCLREFDGYRNIDTMDDLRPGAIYRGIS | 401 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 292932 | 296821 | + | CmoCh05G000750.1 | Cmo05g00075 | 382210 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo05g00075 | 401 | MobiDBLite | consensus disorder prediction | 34 | 50 | - | - | |
Cmo05g00075 | 401 | Pfam | Myb/SANT-like DNA-binding domain | 68 | 152 | IPR044822 | - | |
Cmo05g00075 | 401 | ProSiteProfiles | Myb-like domain profile. | 61 | 125 | IPR001005 | - | |
Cmo05g00075 | 401 | PANTHER | TRIHELIX TRANSCRIPTION FACTOR GT-4 | 5 | 190 | - | - | |
Cmo05g00075 | 401 | MobiDBLite | consensus disorder prediction | 34 | 67 | - | - | |
Cmo05g00075 | 401 | Gene3D | - | 69 | 131 | - | - | |
Cmo05g00075 | 401 | PANTHER | - | 204 | 400 | - | - | |
Cmo05g00075 | 401 | SMART | sant | 65 | 127 | IPR001005 | - | |
Cmo05g00075 | 401 | MobiDBLite | consensus disorder prediction | 51 | 67 | - | - | |
Cmo05g00075 | 401 | CDD | GT1 | 67 | 132 | - | - | |
Cmo05g00075 | 401 | PANTHER | TRIHELIX TRANSCRIPTION FACTOR GT-4 | 204 | 400 | - | - | |
Cmo05g00075 | 401 | PANTHER | - | 5 | 190 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g00075 | Cmo-Chr5:292932 | Cmo06g00219 | Cmo-Chr6:1181729 | 1.89E-12 | dispersed | |
Cmo12g00042 | Cmo-Chr12:230221 | Cmo05g00075 | Cmo-Chr5:292932 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9770 | PF13837 | Myb_DNA-bind_4 | 2.70E-21 | CL0123 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo05g00075 | - | - | csv:101222888 | 688.337 |