Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00089 ATGGATATTACCGAGGTTGAAGAAAATTTATTTGCTGCAAGTGATGCCAAGCTACACGGGGGAATGTGCAAGACTCTTTCTGCAATATATTGTGAAGTGTTATCAATTTTCCCTTCATTGGAAGCTGCCCGACCTCGGAGCAAATCTGGTATCCAGGCATTATGTTCACTGCATGTAGCACTGGAAAAAGCCAAGAATACTCTCCAACATTGTACAGAGAGCAGCAAACTTTACTTGGCTATAACTGGGGACTCTGTCCTGTTAAAGTTTGAGAAGGTAAAAAGAGCTCTGCAAGATAGTCTTAAACGTGTTGAAGATATTGTTCCACAGTCAATTGGCTATCAGGTTCAGGAGATTATGAAGGAACTGGGAAGTACTCATTTTTTCCTAGATCCCTTGGAGAAGCAAGTTGGCGATGACATTATTTTATTGCTCCAACAGGGACGAACATTTAACAACACTGTTGACAACGATGAGCTTGAAGCTTTTCACCAAGCTGCTATTAGACTTGGAATAAACTCCTCAAGAGCAGCTCTTGCAGAGAGAAGGGCACTAAAGAAACTAATTGACCGCTCTCGTATTGAAGAGGACAAGAGGAAGGAATCCATTGTAGCATATCTTTTGCATCTCATGAGGAAGTACTCCAAGTTATTTAGAAGTGAGGTATCAGACGACAACGATTCACAGGGTTCTGGACCTTGTTCACCCACTGTTCAGGGCTCTCTCGAGGACAGTGGACCTGGTGGAAACGGTCAGGCCTTTGAAAGGCAGCTAACAAAGATTGGTTCTTTTATTTTGAAGCCAAAAAATCGCAGATTTGAGCCGACTCCCCTTCCACCTGACGAGTTGAGGTGCCATATTTCATTGCAGCTTATGTATGATCCGGTCATAATTGCTTCCGGGCAAACATATGAAAGGATTTGCATTGAGAAGTGGTTTAGTGATGGCCATAACACCTGCCCGAAAACTCAACAGAAACTCTCTCATCTTACACTGACTCCGAATTACAGTGTTAAGGGCCTGATTACAAACTGGTGTGAACAGCATGGAGTTCCTATTCCTGATGGACCTCCAGATAGTCTTGACCTAAATTACTGGAGGCTCGCGTTATCTGAATCAGAGTCTCAATTGTCACATATGGAGTCTGTTGGTTCTTGTAAGTTGAAAGATGTTAAAGTTGTTCCACTAGAAGAAAATAGTATAACTGAGGAGATCAAAGGAAACGTAATGGACGACAAATCTGCTGAAGATCAAAAGTCCGACATAAATATGCATGCTAAATACGAAGAGTATTTGAAAGTCTTAAATGAAGAAGCTGACTTAAGGAAAAAGTCGGCGGTTGTGGAGCAAATGAGACAATTGCTCAAGGAGGATGAAGAGGCGAGGATATTTATGGGAGCTAATGGATTCGTCCAGGGACTTCTACGCTACTTAGAGATGGCCATGCGAGAACAAAATACTAGGGCTCAGGAAAGTGGAGCAATGGCTCTTTTCAACCTTGCTGTCAACAACGACAGGAACAAAGAAATAATGCTGGCGGCAGGGATGATTCCATTGTTGGAGGAAATGATTATGAACCCAAATTCCCACGGATATGCAACGGCCCTCTATCTCAACGTCTCCTGTCTGGAAGAAGCAAAATCTATTATCGGCTCAAGTTGTGCAGTCCCGTACTTGATTCAGCCCCTCCACGCTCGTACCCAAACACTATGCAAGCTTGATGCACTTCACACACTTTACAATCTCTCAACTGTGCCCTCCAATATACCCAACCTGATTTCTTCTGAAATCATCGGGGGACTTCAAGCCCTTCTTGCAGCCCGTCTTGATCGAACATGGACCGAAAAGTGCATAGCCATCTTGATAAATATAGCTTCAAGTGAATTAGGTAGAGATCAAATGTCATCCACTCCAGAAATTATCAGTGGGTTGGCAGCAATATTAGACAGTGGTGAAGCCCTTGAGCAGGAACAAGCAGTGACTTGTCTCTTGATTCTGTGCAATGGGAATGAGAAGTGCAGTGAGATGGTCCTACAGGAAGGCGTAATTCCCGGGCTGGTGTCGATGTCTGTGAACGGGACAACGAGAGGTAAGGAGAAGGCTCAAAAGCTTCTGATGTTGTTTAGGGAGCAACGACAACAGGAGCCACCACCGCCACTGCCACTGCCACCTGTATCCATACCGAAACCACTATCAGAGAGTAGCGGGACATCCATGCCTGTGGCAGAATCAAAGCCACTGTGCAAGTCAATTTCAAGAAGAAAAACAGGAAAAGCTTTTGGCTTTTTATGGAAAAGCAAAAGCTATTCAGTGTACCAATTCTGA 2325 43.91 MDITEVEENLFAASDAKLHGGMCKTLSAIYCEVLSIFPSLEAARPRSKSGIQALCSLHVALEKAKNTLQHCTESSKLYLAITGDSVLLKFEKVKRALQDSLKRVEDIVPQSIGYQVQEIMKELGSTHFFLDPLEKQVGDDIILLLQQGRTFNNTVDNDELEAFHQAAIRLGINSSRAALAERRALKKLIDRSRIEEDKRKESIVAYLLHLMRKYSKLFRSEVSDDNDSQGSGPCSPTVQGSLEDSGPGGNGQAFERQLTKIGSFILKPKNRRFEPTPLPPDELRCHISLQLMYDPVIIASGQTYERICIEKWFSDGHNTCPKTQQKLSHLTLTPNYSVKGLITNWCEQHGVPIPDGPPDSLDLNYWRLALSESESQLSHMESVGSCKLKDVKVVPLEENSITEEIKGNVMDDKSAEDQKSDINMHAKYEEYLKVLNEEADLRKKSAVVEQMRQLLKEDEEARIFMGANGFVQGLLRYLEMAMREQNTRAQESGAMALFNLAVNNDRNKEIMLAAGMIPLLEEMIMNPNSHGYATALYLNVSCLEEAKSIIGSSCAVPYLIQPLHARTQTLCKLDALHTLYNLSTVPSNIPNLISSEIIGGLQALLAARLDRTWTEKCIAILINIASSELGRDQMSSTPEIISGLAAILDSGEALEQEQAVTCLLILCNGNEKCSEMVLQEGVIPGLVSMSVNGTTRGKEKAQKLLMLFREQRQQEPPPPLPLPPVSIPKPLSESSGTSMPVAESKPLCKSISRRKTGKAFGFLWKSKSYSVYQF 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 359746 364891 - CmoCh05G000890.1 Cmo05g00089 382224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00089 774 PANTHER U BOX DOMAIN-CONTAINING 1 718 - -
Cmo05g00089 774 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Cmo05g00089 774 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Cmo05g00089 774 MobiDBLite consensus disorder prediction 712 746 - -
Cmo05g00089 774 MobiDBLite consensus disorder prediction 222 253 - -
Cmo05g00089 774 MobiDBLite consensus disorder prediction 224 246 - -
Cmo05g00089 774 CDD RING-Ubox_PUB 283 325 IPR045210 -
Cmo05g00089 774 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 352 IPR013083 -
Cmo05g00089 774 SUPERFAMILY RING/U-box 279 355 - -
Cmo05g00089 774 MobiDBLite consensus disorder prediction 714 728 - -
Cmo05g00089 774 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 718 - -
Cmo05g00089 774 Gene3D - 400 715 IPR011989 -
Cmo05g00089 774 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Cmo05g00089 774 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 469 515 IPR000225 GO:0005515
Cmo05g00089 774 SUPERFAMILY ARM repeat 432 709 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00805 Cmo-Chr4:4016086 Cmo05g00089 Cmo-Chr5:359746 7.15E-81 dispersed
Cmo05g00089 Cmo-Chr5:359746 Cmo16g00674 Cmo-Chr16:3336796 7.29E-90 dispersed
Cmo12g00050 Cmo-Chr12:263478 Cmo05g00089 Cmo-Chr5:359746 0 wgd
Cmo18g00698 Cmo-Chr18:8845107 Cmo05g00089 Cmo-Chr5:359746 0 wgd
Cmo04g01920 Cmo-Chr4:9795617 Cmo05g00089 Cmo-Chr5:359746 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00089 - - csv:101220593 1304.27