Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00102 ATGGGCAATTCGGATTGTGGCGTCTCGGAGTTAGAACTCTGTAGAGACGATTCGGCTGCGTTTCATTTCAAATTAATCGCCATCGCCTCCATTCTCACATCGGGAGTCATCGGAATCGCCATTCCATTGTTTGGCAGCCAGCGCCGGTTTCTCAAAACAGACGGAAATCTGTTCGTGACGGCGAAGGCGTTTGCCGCCGGTGTAATTCTCGCCACCGCTTTTGTGCACATGCTTCCGGACGGATCGAAAGCCCTCTCCGATCCGTGCTTGCCGAAATTCCCATGGTCGAAATTCCCCTTCTCGGGATTCTTCGCGATGATGGCGTCGCTGTTGACACTCCTCGTCGATTTCGTCGGGACTCAATACTACGAGCGAAAACAGGGGGTGATTCGATCGAAAGAGGAGGAGAACCGGGTCGGGTCGGTGGAAGATTCCGGGTTGGAATCGGGCATTCTTCCGGCCGGAGATTTGAACGTGAAAGTGTTCGGGGAAGAAGACGGCGGCGCGATGCACATCATTGGAATGCATGCCCACGCCGCCCACCATCGTCACAGTCATCCGCAGGGGAAGGAGGCATGTGATGGGCACGTGAGAGTCCACGATCATGGCCATGGAGGACATGGTCATTCTCATGGGCTTGACGGCGACGATGACGAAAGCGGTGTACGACATGTCGTTGTTTCCCAGATTTTGGAGCTTGGGATAGTGTCACATTCAGTGATAATTGGACTGTCTCTGGGAGTGTCCCACAGCCCATGCACCATTAGACCCTTAATTGCAGCCCTGTCCTTCCATCAGTTCTTTGAAGGCTTTGCCCTGGGCGGCTGCATCTCTCAGGCTCAGTTCAACACCCTCTCCACCTCCCTCATGGCTGTCTTCTTCGCCATCACCACGCCCATCGGCATTGCCATAGGCACGGCGGTCGCCTCCACCTACAACCCGAACAGCACTGGGGCGTTGATTGCAGAAGGGATTTTGGACTCTCTATCCGCGGGAATTCTGGTGTACATGGCTTTGGTTGATTTGATCGCAGCTGACTTTCTTAGCAAGAGAATGAGCTGCAATTTTAGACTCCAAATTGTTTCTTATTGTACTCTATTTCTCGGGGCGGGGCTGATGTCTTCGCTCGCTCTCTGGGCTTGA 1143 53.81 MGNSDCGVSELELCRDDSAAFHFKLIAIASILTSGVIGIAIPLFGSQRRFLKTDGNLFVTAKAFAAGVILATAFVHMLPDGSKALSDPCLPKFPWSKFPFSGFFAMMASLLTLLVDFVGTQYYERKQGVIRSKEEENRVGSVEDSGLESGILPAGDLNVKVFGEEDGGAMHIIGMHAHAAHHRHSHPQGKEACDGHVRVHDHGHGGHGHSHGLDGDDDESGVRHVVVSQILELGIVSHSVIIGLSLGVSHSPCTIRPLIAALSFHQFFEGFALGGCISQAQFNTLSTSLMAVFFAITTPIGIAIGTAVASTYNPNSTGALIAEGILDSLSAGILVYMALVDLIAADFLSKRMSCNFRLQIVSYCTLFLGAGLMSSLALWA 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 408562 411279 + CmoCh05G001020.1 Cmo05g00102 382237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00102 380 PANTHER ZINC/IRON TRANSPORTER 1 380 - -
Cmo05g00102 380 PANTHER ZIP ZINC/IRON TRANSPORT FAMILY PROTEIN 1 380 - -
Cmo05g00102 380 Pfam ZIP Zinc transporter 22 377 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cmo05g00102 380 TIGRFAM zip: ZIP zinc/iron transport family 6 380 IPR004698 GO:0005385|GO:0016021|GO:0071577
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00102 Cmo-Chr5:408562 Cmo09g00698 Cmo-Chr9:3446176 5.13E-96 dispersed
Cmo12g00579 Cmo-Chr12:3584802 Cmo05g00102 Cmo-Chr5:408562 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00102 K14709 - csv:101218224 637.106