Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00107 ATGGTGCTGAGAAGACTTGGCAGGAACAGAAGTTTCAACAGAGAGAATCCAGATATTTTGATTATGATGATTGCAGTGGATCAGATAATAAGAGGACATGAGCAAGACAAAGGAGATGGCACAGAGAGGAAGGGCATGGGCCCTTTAAAGCCTGTAACAAAGAAGATTGTGATTATACATCTCCTTGGTGTTCAATACTCCAAACTTAAGCTTCTCGGGGCTGTCATTGATCTCCTGACCACAGTGTACTTTTCAGAAGATCAAGTGTGGGGCTTTCACGTTAAGTTTCTCATCCTATTTTGGATGATAAAGATTTATCAAGTGGAAGTTTCTTCTCCAATGTCGACTGCTCTGCAACAAATCGATCTGGGGGATGCTTGTTCGAGTCCCTCTGGTAATGTTGAGTTTCATAATCAGTTAGCAGGAGCAATTCCTGTTACTTGTTTTCAATCCACCTCTCTTACTCCACTGAACGTTATTTGTGAAAATACAAAAGATTCAGCATTTCCAGACCGTCATTTCCAGCCATTAGAAACTTTTAGAACGTGCATCATACCCAGTACCTCTAATGCTTTAAATTCTTCATTTGCAAGTTCTCTGATCTGTGAAGGTGATGAGTCTTTATGTAACTTGAACAACAAGTGGGAAAGCCAGAGGTTTAACTGTATTCAGCAACTTGCAAGGGAGAATCCAGAAAGATCAGATTTCCAGACCATCTCGTCTATGGAAAATCTGAATCAAAATGGCTGGATGCCATCTAATACTATGAACTCCAAGTTATGGAATGAGCTTTCTCTTAGTCTTGCCACATCTAATCCCGTCCTTAGTGGAGGAACCAATTTTCTGGACCAGTATTCACAGTTGACCTTTTCTGGTGCTACTCAGCCTTGCTTGAATAGCACAGAATTAGCCTCGAACCTGAATTCGTGCAACTTCAGGGACCTCTCTCTAAGTTACAGATGTGGTAGTCCTGTTCACCTCTCTCAAGCAATAGCGGGATCGAGATATCTCTCGGTCATTCAGGACGTACTTTCTCAAATTGCAAGCTATCCACTAGAAAGTTCAGAACAAGATAGGCATTTAACATCCACAGTTGGGTTTGTGCCATTCTCATCAAGTTCCCTGGATGATAATACAGTTGAATTCGGTTCTGATGTAACTGGTAGATGCAGTTCACAAATTCAAATGGAGATTCAATGGCAAAAACTATCTGGTGACGCCAAGAAATCCCATCTGTTGACTCTACTACAATTGATTGATGAAAGGTACAGTCAATGCTTGGATGAGATCCATACTGTTACATCTGCATTTCATGCCGCCACTGATTTGGACCCTCGCTTGCATACTCGTTACACTCTCCAGACAATCACTTCTGTTTATAAAAACTTGAGGGAGAAAATTACTGATTGTATTATTGCTGTGGGGATGCATTCTGACACAATGTGCACCAAGGAGAACGAGAAAACCTTCGAGGCATCATTCATCCAGAAGCAGTGGGCTCTCCAGCAGTTGAAAAGGAAAGATAGTCAATTATGGAGGCCACAGAGAGGCTTACCTGAAAAATCTGTCTCAGTTCTAAGGGCATGGATGTTTCAGAACTTTCTCCATCCGTACCCCAAGGACACAGAGAAGCATTTACTTGCAGTAAAAAGTGGATTAACCAGAAATCAGGTTTCTAATTGGTTCATCAATGCTCGTGTTCGGCTGTGGAAACCGATGATCGAAGAAATGTATGCTGAAATGAGCAGAAGAAAATCCAGTTAA 1764 41.61 MVLRRLGRNRSFNRENPDILIMMIAVDQIIRGHEQDKGDGTERKGMGPLKPVTKKIVIIHLLGVQYSKLKLLGAVIDLLTTVYFSEDQVWGFHVKFLILFWMIKIYQVEVSSPMSTALQQIDLGDACSSPSGNVEFHNQLAGAIPVTCFQSTSLTPLNVICENTKDSAFPDRHFQPLETFRTCIIPSTSNALNSSFASSLICEGDESLCNLNNKWESQRFNCIQQLARENPERSDFQTISSMENLNQNGWMPSNTMNSKLWNELSLSLATSNPVLSGGTNFLDQYSQLTFSGATQPCLNSTELASNLNSCNFRDLSLSYRCGSPVHLSQAIAGSRYLSVIQDVLSQIASYPLESSEQDRHLTSTVGFVPFSSSSLDDNTVEFGSDVTGRCSSQIQMEIQWQKLSGDAKKSHLLTLLQLIDERYSQCLDEIHTVTSAFHAATDLDPRLHTRYTLQTITSVYKNLREKITDCIIAVGMHSDTMCTKENEKTFEASFIQKQWALQQLKRKDSQLWRPQRGLPEKSVSVLRAWMFQNFLHPYPKDTEKHLLAVKSGLTRNQVSNWFINARVRLWKPMIEEMYAEMSRRKSS 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 431215 434668 + CmoCh05G001070.1 Cmo05g00107 382242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00107 587 CDD homeodomain 512 573 IPR001356 GO:0003677
Cmo05g00107 587 Pfam Homeobox KN domain 529 568 IPR008422 GO:0003677|GO:0006355
Cmo05g00107 587 SMART HOX_1 512 576 IPR001356 GO:0003677
Cmo05g00107 587 SMART prehox3 325 469 IPR006563 -
Cmo05g00107 587 PANTHER HOMEOBOX PROTEIN ATH1 112 586 - -
Cmo05g00107 587 Gene3D - 506 587 - -
Cmo05g00107 587 SUPERFAMILY Homeodomain-like 513 581 IPR009057 -
Cmo05g00107 587 ProSiteProfiles 'Homeobox' domain profile. 509 572 IPR001356 GO:0003677
Cmo05g00107 587 Pfam Associated with HOX 331 468 IPR006563 -
Cmo05g00107 587 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 112 586 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00107 Cmo12g00574 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00107 Cmo-Chr5:431215 Cmo14g00358 Cmo-Chr14:1624151 7.51E-47 dispersed
Cmo12g00574 Cmo-Chr12:3539266 Cmo05g00107 Cmo-Chr5:431215 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9773 PF07526 POX 8.30E-21 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00107 - - cmos:111462608 954.51