Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00110 ATGTTGAATGAAGAAATATTTGCCGTCCTCCTTTCTGAAACATTCCATCTGTATAATCTCTACTGGATGCTGAGTCTTAACTATTTTGAGTTGCATTTACATGCATTTGCATTTCCTTCCTGCGCTTCTTTTTGTCTAATCGTCTCTGTGAATCCACTCTTTCTGTCATTTCTACATTCGACACTGCTCAAGTTCTTCTGGGATTTTGGATTTGGATATAACTTTGTTCCGATTTTCGACTCCATGGACGCGACCTCTTCCTCTGGCGCTCTTTCTAATATGAAGCTTCTCAGTGCCAATAAACTCAATTCGGATCACAGGGTTCCCACGTTATTCTCCTTGCCGAAACCTCTCGTGTCTTTATCTTGCAAATCCTATAGAAATTTGCAAGTTCGTGATAAGTCTACATCTCAAGGATTAGTGGTTTCTTGTTCTAGCTCCAATAGTCACAGAGATGTGATGCAGGGGTTTCACCTTTCTGGCCCCATTGAGAAGAGAAGCCGTCTTGGACAAGCATTTTGCTCGGTAGAAAGTTTCACCTATGGTGAATATGCTTTAGAATCTCGCTCTCAGGCAGCGGAAGAGAAGGTTGGAGTTCTGCTTCTGAATCTAGGAGGGCCAGACACGCTTGATGATGTTCAGCCATTTCTGTACAATCTATTTGCAGATCCGGATATTATCCGGCTCCCAAGGTTGTTCCGTTTCCTCCAAGAGCCATTGGCCAAATTAATATCTACCTTTCGTGCTCCCAAAAGTAAAGAAGGGTATGCTTCAATAGGAGGCGGCTCACCTTTGCGTAAAATAACAGATGAGCAGGCACAGGCGCTTAAAATGGCTTTGGAAGAGAAAAACACTTCTGCTAATGTCTATGTGGGAATGCGCTATTGGTACCCTTTCACAGAGGAAGCAATTCAGCAAATTAAGAGGGATGGGATAACAAGACTTGTGGTGCTGCCATTATATCCACAGTACTCTATTTCCACAACTGGGTCTAGTATTCGTGTTCTCCAGAAGATTTTCAGGGAAGATGCACATCTCTCAAAATTGCCTGTTTCAGTTATAAAGTCCTGGTATCAACGTGAAGGGTATATTAAGTCCATGGCTGACTTGGTTCAGGCAGAGCTGAAGAATTTTATCAATCCTCAAGAGGTCATGATTTTCTTTAGTGCACATGGGGTTCCCGTCAGTTATGTTGAGAATGCTGGAGATCCATACAAAGATCAAATGGAGGAGTGCATCTACCTAATCATGCAAGAGCTGAAAGCCAGAGGAATTGGAAATGAGCATACTCTTGCTTATCAGAGCCGAGTTGGACCTGTACAATGGCTGAAGCCATACACAGATGAAGTTCTTGTTGAGCTTGGCCAGAAGGGTATTAAGAGTCTCCTAGCCGTTCCTGTGAGCTTTGTGAGCGAGCACATTGAGACTCTTGAGGAGATAGATATGGAGTATAAGCACTTGGCACTTGAATCTGGGATCGAAAACTGGGGTCGTGTGCCTGCTCTCAATTGCAAATCTTCTTTCATTTTGGATTTGGCTGATGCAGTGATCGAAGCCCTTCCATCCGCTACAGCTTTGTCGCCCCATGCAAGCTCAACAGATGCAGATGATTGTGATCCTTTCCAATATGCTATCAAATTGCTATTTGGTTCAGTCCTCGCAATAATCTTGTTACTTTCACCAAAAGCATTTCTGGCTTTTAGGAATAATTTCATTTAG 1719 43.05 MLNEEIFAVLLSETFHLYNLYWMLSLNYFELHLHAFAFPSCASFCLIVSVNPLFLSFLHSTLLKFFWDFGFGYNFVPIFDSMDATSSSGALSNMKLLSANKLNSDHRVPTLFSLPKPLVSLSCKSYRNLQVRDKSTSQGLVVSCSSSNSHRDVMQGFHLSGPIEKRSRLGQAFCSVESFTYGEYALESRSQAAEEKVGVLLLNLGGPDTLDDVQPFLYNLFADPDIIRLPRLFRFLQEPLAKLISTFRAPKSKEGYASIGGGSPLRKITDEQAQALKMALEEKNTSANVYVGMRYWYPFTEEAIQQIKRDGITRLVVLPLYPQYSISTTGSSIRVLQKIFREDAHLSKLPVSVIKSWYQREGYIKSMADLVQAELKNFINPQEVMIFFSAHGVPVSYVENAGDPYKDQMEECIYLIMQELKARGIGNEHTLAYQSRVGPVQWLKPYTDEVLVELGQKGIKSLLAVPVSFVSEHIETLEEIDMEYKHLALESGIENWGRVPALNCKSSFILDLADAVIEALPSATALSPHASSTDADDCDPFQYAIKLLFGSVLAIILLLSPKAFLAFRNNFI 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 448967 457245 - CmoCh05G001100.1 Cmo05g00110 382245

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00110 572 CDD Ferrochelatase_C 367 503 IPR033644 -
Cmo05g00110 572 Gene3D - 196 520 - -
Cmo05g00110 572 Hamap Coproporphyrin III ferrochelatase [cpfC]. 195 520 IPR001015 GO:0004325|GO:0006783
Cmo05g00110 572 PANTHER FERROCHELATASE 131 571 IPR001015 GO:0004325|GO:0006783
Cmo05g00110 572 Gene3D - 358 501 - -
Cmo05g00110 572 Pfam Ferrochelatase 196 519 IPR001015 GO:0004325|GO:0006783
Cmo05g00110 572 SUPERFAMILY Chelatase 195 527 - -
Cmo05g00110 572 TIGRFAM hemH: ferrochelatase 194 519 IPR001015 GO:0004325|GO:0006783
Cmo05g00110 572 ProSitePatterns Ferrochelatase signature. 386 405 IPR019772 GO:0004325|GO:0006783
Cmo05g00110 572 CDD Ferrochelatase_N 197 359 IPR033659 -
Cmo05g00110 572 PANTHER FERROCHELATASE-1, CHLOROPLASTIC/MITOCHONDRIAL 131 571 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00110 K01772 hemH, FECH; protoporphyrin/coproporphyrin ferrochelatase [EC:4.98.1.1 4.99.1.9] - csv:101216568 844.728
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00110 Cmo12g00571 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00110 Cmo-Chr5:448967 Cmo20g00314 Cmo-Chr20:1542031 4.36E-20 dispersed
Cmo12g00571 Cmo-Chr12:3520853 Cmo05g00110 Cmo-Chr5:448967 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g60 . Blo12g01008 . . . . . . Cmo05g00110 Cmo12g00571 . Cma05g00103 . Car12g00578 Sed08g1759 Cpe07g00551 . Bhi04g00495 Tan02g1649 Cmetu03g0633 . Hepe08g1382 . Lcy13g2176 . . . . . . . Cone4ag1651 Cone7ag1299 . . . . . . . . . . . . . . . . . . Cma12g00630 . Car05g00089 Cpe11g00083 . . . . . . . . . . . . . . . Lsi08g01574 Csa02g01847 Chy03g01637 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010052 0 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00110 Cmo_Chr05 FPKM 4.181545 4.192364 19.125793 18.873716 7.000673 7.826947 6.956237 0.713223 0.796325 0.676311