Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00111 TCTTTGTATAGTGTTTTTACAAGTGAATTTGTAATTATCGTTCGTACCAATCGTATCCCCCACCTTTTCGGCAACTTCATGACTCGAATCACCAACGGAGCTTTACTCTTTCTCTTGTTCCTTGCCGTAATCGGCCTGGCTTCCGGTGGCCGGGACTTTCCCGGTGATTTTCTCCGGTTGCCGTCCGAGGCATTGAGATTTTTTCGCGGAGAAGCCTCTGACGCTAGTGATGAGGACGCCGTGGGGACGAGATGGGCTGTTTTGATCGCCGGTTCTAATGGATACTGGAATTACAGGCACCAGAATAATCTCGTCATGGAAACTGTAGCTGCTTTCAAACAAAGTTTCCTTGTTTGGGATTTTGAGCAAGTAGCTGAGTGTTTAAGGCCTAACTACTTGGAGAATGATGAACACATTTTCCACCAGGCTGATATCTGCCATGCTTATCAATTGTTACGGAAAAATGGGCTAAAAGATGAGAACATCATCGTTTTCATGTATGATGACATTGCCTTCGATCCAGAGAACCCAAGACCTGGGGTCATCATCAACCATCCTCAGGGATCTGATGTTTATCATGGAGTCCCGAAGGATTACACTGGTGAGGATGTTAATGTGAACAACTTTTTTGCTGCCATTCTTGGAAACAGAACAGCTCTTTCGGGGGGCAGCGGGAAGGTTGTTGACAGTGGTCCTGATGATCATATTTTCATATACTACAGTGATCATGGTGGCCCTGGTGTGCTTGGTGACAATAAAATAATTAGTTTACTTTTATGGATGCCTACTTATCCCTATATTTTTGCTGACGATCTTAATGAAGTTTTAAGAAAGAAGCATGCTTCTGGATCCTACAAAAGTCTGGTATTCTATCTTGAAGCTTGTGAATCAGGAAGTATCTTTGAAGGCCTTCTTGACAAAGGTTTGAACATTTATACAACCACCGCATCAAATGCTTATGAGAGCAGTTGGGGTACTTACTGTCCAGGGGATGATCCTAGTCCTCCACCAGAGTATGATACTTGTTTGGGTGACTTGTATAGTGTTGCTTGGTTGGAAGACAGTGATAATCACAATTTGAAGACGGAAACTTTGCGCCAGCAATATGAATTGGTGAAGAAAAGGACGCTAAATGATGATGATGCGTTTGGTTCCCACGTCATGCAATATGGTGATCTAACGCTGAACAAGAACATTTTGTTCTCATTTCTGGGTACAGATCCCGCTAATGAGAACAACACTTTTGTCGAGGAGAACTCTTTGAGGCTAACCACAAAAGTTACCAATCAGCGTGACGCTGATCTGGTCCACTTTTGGGAAAAGTTTCGCAAAGCTCCAGAAGGTTCCAACAGGAAAATCGAAGCTCAGAAGAAGTTTGTGGAAGCAATGTCCCATAGAGTTCATATTGATAACAGTGTGAAGCTAATTGGAAAGCTGTTATTTGGAATTGAAAAAGGTCCCGAGGTGCTTAATGCCATCCGTCCCGCAGGACGACCCCTTGTCGATGATTGGGATTGTCTGAAGAATATGGTTAGGAGCTTTGAGGCACGGTGTGGATCTCTCTCCCAGTACGGAATGAAACACATGAGGTCCTTTGCAAACCTATGCAATGCTGGAATCAGCAAGGAGCAGATGGCAGAGGCATCGGCGCAAGCTTGCAGACTTGATGATAATCGAAGAGGGAAATTTGAATCTGAGCTTTGTGTTTCGTTGGCCGATTCTGTAATCCTTTTTTCTAAAATCGGAGTTGATTTCCGGAGAGGCGCGAGGGGGGAAGACTTCGAGTTTTGGAGGTTTGAAAATAGAAATCAGTGTTTTAAGATAAATATCCAAGCGATTTCAGTGATTTACATTTTGCTTGTTTTCTGCGGTGAAAGAAGCAGATTTCTGTTCTTCGTGAGAGCTGGTTCTTGGGGGGGGAGGGGAATCCAGATCAGAAATTTCAGGTCTGATTTTCTTCCTGTTCATTTCTACCTGCAGCATCGAATAGAAATCGCCTTCTTCCTCTGA 2010 43.73 SLYSVFTSEFVIIVRTNRIPHLFGNFMTRITNGALLFLLFLAVIGLASGGRDFPGDFLRLPSEALRFFRGEASDASDEDAVGTRWAVLIAGSNGYWNYRHQNNLVMETVAAFKQSFLVWDFEQVAECLRPNYLENDEHIFHQADICHAYQLLRKNGLKDENIIVFMYDDIAFDPENPRPGVIINHPQGSDVYHGVPKDYTGEDVNVNNFFAAILGNRTALSGGSGKVVDSGPDDHIFIYYSDHGGPGVLGDNKIISLLLWMPTYPYIFADDLNEVLRKKHASGSYKSLVFYLEACESGSIFEGLLDKGLNIYTTTASNAYESSWGTYCPGDDPSPPPEYDTCLGDLYSVAWLEDSDNHNLKTETLRQQYELVKKRTLNDDDAFGSHVMQYGDLTLNKNILFSFLGTDPANENNTFVEENSLRLTTKVTNQRDADLVHFWEKFRKAPEGSNRKIEAQKKFVEAMSHRVHIDNSVKLIGKLLFGIEKGPEVLNAIRPAGRPLVDDWDCLKNMVRSFEARCGSLSQYGMKHMRSFANLCNAGISKEQMAEASAQACRLDDNRRGKFESELCVSLADSVILFSKIGVDFRRGARGEDFEFWRFENRNQCFKINIQAISVIYILLVFCGERSRFLFFVRAGSWGGRGIQIRNFRSDFLPVHFYLQHRIEIAFFL 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 458098 465889 + CmoCh05G001110.1 Cmo05g00111 382246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00111 669 PANTHER VACUOLAR-PROCESSING ENZYME 34 104 - -
Cmo05g00111 669 PANTHER VACUOLAR-PROCESSING ENZYME 140 553 - -
Cmo05g00111 669 PIRSF AE 27 107 IPR043577 GO:0004197|GO:0051603
Cmo05g00111 669 PIRSF AE 137 567 IPR043577 GO:0004197|GO:0051603
Cmo05g00111 669 Gene3D - 82 429 - -
Cmo05g00111 669 Pfam Peptidase C13 family 141 405 IPR001096 GO:0006508|GO:0008233
Cmo05g00111 669 PANTHER HEMOGLOBINASE FAMILY MEMBER 34 104 IPR001096 GO:0006508|GO:0008233
Cmo05g00111 669 PANTHER HEMOGLOBINASE FAMILY MEMBER 140 553 IPR001096 GO:0006508|GO:0008233
Cmo05g00111 669 Gene3D - 430 560 IPR046427 -
Cmo05g00111 669 PIRSF Legumain 136 566 IPR001096 GO:0006508|GO:0008233
Cmo05g00111 669 PIRSF Legumain 29 107 IPR001096 GO:0006508|GO:0008233
Cmo05g00111 669 PRINTS Hemoglobinase (C13) cysteine protease signature 198 213 IPR001096 GO:0006508|GO:0008233
Cmo05g00111 669 PRINTS Hemoglobinase (C13) cysteine protease signature 126 150 IPR001096 GO:0006508|GO:0008233
Cmo05g00111 669 PRINTS Hemoglobinase (C13) cysteine protease signature 151 180 IPR001096 GO:0006508|GO:0008233
Cmo05g00111 669 PRINTS Hemoglobinase (C13) cysteine protease signature 226 245 IPR001096 GO:0006508|GO:0008233
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00111 K01369 LGMN; legumain [EC:3.4.22.34] - csv:101216082 861.292
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00111 Cmo12g00569 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00111 Cmo-Chr5:458098 Cmo15g01213 Cmo-Chr15:8392356 1.64E-11 dispersed
Cmo10g00661 Cmo-Chr10:3034661 Cmo05g00111 Cmo-Chr5:458098 1.53E-172 transposed
Cmo12g00569 Cmo-Chr12:3508587 Cmo05g00111 Cmo-Chr5:458098 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g53 . . . . Bpe02g01534 . . . Cmo05g00111 Cmo12g00569 . Cma05g00105 . Car12g00576 Sed08g1757 Cpe07g00549 . Bhi04g00491 Tan02g1654 Cmetu02g1720 . Hepe08g1379 . Lcy13g2174 . . . . . . . Cone4ag1649 Cone7ag1300 . Cone20ag0258 . . . . Blo17g00296 Blo18g00291 Bda01g01323 Bda13g01611 Bpe14g00254 . Bma01g00929 . . . . . Cma12g00628 . Car05g00091 Cpe11g00085 . . . . . . . . . . . . . . . Lsi08g01572 Csa02g01849 Chy03g01635 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005098 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00111 Cmo_Chr05 FPKM 10.307535 11.000331 9.778935 10.834204 7.48167 7.235665 9.244644 11.045879 10.70043 9.609445