Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00114 ATGCTGTTGGTCCATTTGCTTGCTCTACAAGGAGCTGCCGTGCCTCCCAAGCACCACGCGGCCATGGCGGCTTTTGGAAAGGGCGCGCAGAATGACGCCAGGGTTGAACTTCCAAATAAACTATTTCAGTTCTGCGTCGAGCAACCCGAGCTTCATCGAGAGTTTTTCATGGGGAAGCGATTCTTGCTCGGAATGTTGATTGTGACATTGACAGTCATAGTTTGTGGAGCTGTGGAGGGTGGTTCGCTTTCTAAACAGAAGAGTATGAGAATGAACTCTCTTAGGAAGCAAGCAATAAAAAGCATTCGGAGCGAAGATGGCGACATCATAGATTGTGTAAGCATTTACGATCAGCCTGCTTTTGATCATCCTGCTCTGAGGAATCACACCATTCAGTTGGCACCCACTTATGATCCCACCATAGATGAGCATTCAAAGAAAGCAACAGCAGAAAGGGAAGGGAAGGAGGAAAAGAATTCCATGGTTGTGAAACAAACATGGAGGAAAAGTGGCAGTTGCCCTGAAGGAACAATACCGATTCGAAGGATCCGAAAGCATGTCCTACTCAAAGCTAAATCGATAGAACGCTATGGACGAAAGAAACCGATGTTTTCCCAAGAAAACGCTCAGCTTCCCATCACCCGAAGTTCGCATACTCTGCTAACGAATCGTTCGAAGGCATTTCTGCTTACTGCAGGAAACAACTACAATGCAGCTAAAGGAGACATTAAAGTATGTAACCCAAGGGTCGAGTTCGATGATGAATATAGTACTTCCCAAGTCGCTCTATTAACCGGCCCTTACTATAATTTTGAGGCTATCGAATCCGGATGGGCAGTAAATCCAGGTGTTTACGGGGATCGACAGACTCGACTGTTCGTGTATTGGACTGCCGATGCTTCCGAAAAAACAGGCTGCTTTGATCTCACTTGCCCAGGTTTTGTTCAAACAAGCAATGAAATTGCTCTTGGTTCAGCTATTTATCCAATCTCAACTCCCAATGGGCTTCCATATGAAATAATTATGTTCCTTTTTAGAGATTTCAAGACAGATAATTGGTGGGTGCAATATGGGGAAAGCATTAACATAGGTTATTGGCCTCCTGAGCTATTCAGTGCACTAAGTCACACAGCAGAAACAGTACAATGGGGAGGGGAAGTTTACAGCACAAACATAGGACGGCCTCCTCACACTAGAACAGCTATGGGCAGTGGAAGGTTTCCTGACTTCATTTCTGGTACTTCGGGTTGGGTAAAACGGATGCGAGTTCGAGATAATTCCATGGTTTTGATGTTTCCTGGTTGGGTTGAGCACTACTCCGATGAATACGATTGTTATGATGTCGATTTCATCCGAGATTATTTAGATGATCCTGAACTATACTATGGAGGACCTGGTAAAAATCCAAGGTGCCCCTAA 1419 44.96 MLLVHLLALQGAAVPPKHHAAMAAFGKGAQNDARVELPNKLFQFCVEQPELHREFFMGKRFLLGMLIVTLTVIVCGAVEGGSLSKQKSMRMNSLRKQAIKSIRSEDGDIIDCVSIYDQPAFDHPALRNHTIQLAPTYDPTIDEHSKKATAEREGKEEKNSMVVKQTWRKSGSCPEGTIPIRRIRKHVLLKAKSIERYGRKKPMFSQENAQLPITRSSHTLLTNRSKAFLLTAGNNYNAAKGDIKVCNPRVEFDDEYSTSQVALLTGPYYNFEAIESGWAVNPGVYGDRQTRLFVYWTADASEKTGCFDLTCPGFVQTSNEIALGSAIYPISTPNGLPYEIIMFLFRDFKTDNWWVQYGESINIGYWPPELFSALSHTAETVQWGGEVYSTNIGRPPHTRTAMGSGRFPDFISGTSGWVKRMRVRDNSMVLMFPGWVEHYSDEYDCYDVDFIRDYLDDPELYYGGPGKNPRCP 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 472047 475615 + CmoCh05G001140.1 Cmo05g00114 382249

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00114 472 Pfam Neprosin activation peptide 101 210 IPR025521 -
Cmo05g00114 472 MobiDBLite consensus disorder prediction 144 170 - -
Cmo05g00114 472 Gene3D - 241 354 - -
Cmo05g00114 472 MobiDBLite consensus disorder prediction 144 163 - -
Cmo05g00114 472 Pfam Neprosin 254 465 IPR004314 -
Cmo05g00114 472 PANTHER PROTEIN, PUTATIVE (DUF239)-RELATED-RELATED 95 470 - -
Cmo05g00114 472 PANTHER CARBOXYL-TERMINAL PEPTIDASE 95 470 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00114 - - - cmax:111492515 960.674
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01758 Cmo05g00114 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01828 Cmo-Chr1:13373568 Cmo05g00114 Cmo-Chr5:472047 6.78E-87 dispersed
Cmo05g00114 Cmo-Chr5:472047 Cmo08g00561 Cmo-Chr8:3435543 1.73E-105 dispersed
Cmo01g01811 Cmo-Chr1:13300303 Cmo05g00114 Cmo-Chr5:472047 1.06E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g49 Blo01g01477 . . . . Bpe02g00477 . . Cmo05g00114 . . Cma05g00108 . . Sed08g1753 . . Bhi04g00486 Tan02g1660 Cmetu03g1286 . Hepe08g1375 . Lcy13g2171 Cla05g01813 Cam05g1937 Cec05g1950 Cco05g2011 Clacu05g1929 Cmu05g1811 Cre05g1937 Cone4ag1646 . Cone17ag0913 . Lsi04g01441 . . . . . . . . . . . . Cmo01g01758 . . . Car01g01365 Car05g00093 Cpe11g00088 Cpe02g00291 Bhi09g03178 . . . Hepe01g1862 Mch11g0397 . . . . . . . . Lsi08g01567 Csa02g01854 Chy03g01630 Cme07g00244
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011410 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00114 Cmo_Chr05 FPKM 0.0 0.184476 26.667107 28.222363 0.170555 0.0 0.0 0.0 0.0 0.0