Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00117 ATGGATTTCATGAAGGTTTTCGATCAAACTGTCCGTGAAATAAAGAGGGAGGTGAATTTGAAGGTCCTGAAGGTTCCCGAAATCGAACAGAAGGTGCTGGATGCAACAGATGATGAACCATGGGGTCCTCATGGATCTGCCTTAGCAGAAATAGCGCAAGCTACAAAGAAATTTTCTGAAACTCAGATGGTTATGAATGTTCTTTGGACAAGATTGAGTGAGACTGGTAAGAATTGGCGTCTTGTCTATAAGTTATATATGTTCTTATTTTCTGAAAACAGTAGTTTACATCCCACTCTTGCTTATGAGTGGTGTCGTCAACTTCTTCAGGCTTTGGCTGTTATAGAGTATTTGGTGGCACATGGATCTGAACGTGCAGTGGATGACATTATCGAACATACTTTCCAGATATCTTCACTCTCGAGTTTTGAACATGTTGAACCAAATGGAAAGGACATGGGCATAAATGTCAGGAAGAAGGCTGAAAACATTGTAGCCCTTTTGAATGATAAAGATAAAATACAAGAAGTGAGAAACAAAGCAGCTGCAAATCGTGAAAAGTACTTCGGACTTTCTTCTACTGGAATTACTTACAAGTCAGGTTCAGCCTCGTATGGCAGCAGTAGTTCTTATAGCAGTGATAGTTATCAAGGTCAGAGTAGCTTTAGAGGCGATAGATTTCGTGATAGGAGCAGCAACAGGGATTCATTTAGAAAGGAAAAAAATGATCAAGATGATTTTAAAAAGTCAGATTGGGTAAAGCAGGATTATGGCAAGGGTTCTGCGCAAAACAGCAGCAAGGATCAAGGTAAAACATCATTTGGTACATCAAAGCCATCAAAAAAGTCGGAAGACTCTGCAAATCAGATTGCCTCCTTCAGTTCTAGTACCCCTACAAATAATTCTGACGAAGATTTTGATGATTTTGATCCTCGTGGAACTTCCACCACCACCACGACAAAAGCTGCTGCACCAAGCCCCAAAAAGGTGGATCTTTTTGGAGATAGTTTAATCGGAGATCTCATGGATGCTCCAACTCTTGTTCCTCCTGGAAAGCCTGACAGCAGTTCTCCGGTGGTTGATCTGTTTGCAGATGCTACTTTTGTATCTGCTTCAGCGCAAGTGGAAAAGGAACCAAATTCCCCATCAAAGACTGAGATTGATCTATTCGCTTCACAACCGGCTTCGGTTTCTCCAACAGTCGACTTTTTTGCCTCTCCTGAGCCGGTTGTGCAAACAGAAACCAACTTTGCCGATGCAGCAAGAGACAGTAAAGCTTCACAACCTGCTTCAGTTTCTGCAACAATTGACTTTTTTGCCTCTTCTAAGCTAGTTGTGCAAACGGAAACTAACTTTGCCAGTGCAGCAAGAGACATTAAAGCTTCACAACCCGCTTCTGTTTCTGCACCAATTGACCCTTTTGCCTCTGCTGAGCCGGTTGTGCAAACAGAAACCAACTTTGCTAGCACAAAAAGAGACAGTAAAACTGTGGATCCATTTGCTGCTCTTCCACTTAACTCTTTTGATGGATCAGATTTTTTGGGTGCAACTTCTTCGCGTTCTGAACCAGTGTCCTCAGAACCTTCCCAGAATCCTGTTGGTGGCCCATCTAGTAATTTAGATGGAAAATCTATCAACATTTCAACAGCTCCAGCGAAGAAGAATACTTTCCAGGTCAAGTCTGGGATTTGGGCAGATTCACTTAGTCGAGGATTGATTGATCTTAATATCTCCGCTCCCAACAAGGTTTCCCTGATAGATGTCGGTGTGGTGGGCGGACTGAGCGATTTCTCAAACGAGAGGGAGAAAGGACCGGCACCTACTTATCACATGGGGCAAGCAATGGGTGCAGGGTCTGGTCTTGGTCGGACAGGATCGCAGGGGATTGGAGACGATTTCTTTTCACAACTTTCTGGTCAACAATACCAATTTGGTGGTTTCCAGAAGTAA 1950 43.08 MDFMKVFDQTVREIKREVNLKVLKVPEIEQKVLDATDDEPWGPHGSALAEIAQATKKFSETQMVMNVLWTRLSETGKNWRLVYKLYMFLFSENSSLHPTLAYEWCRQLLQALAVIEYLVAHGSERAVDDIIEHTFQISSLSSFEHVEPNGKDMGINVRKKAENIVALLNDKDKIQEVRNKAAANREKYFGLSSTGITYKSGSASYGSSSSYSSDSYQGQSSFRGDRFRDRSSNRDSFRKEKNDQDDFKKSDWVKQDYGKGSAQNSSKDQGKTSFGTSKPSKKSEDSANQIASFSSSTPTNNSDEDFDDFDPRGTSTTTTTKAAAPSPKKVDLFGDSLIGDLMDAPTLVPPGKPDSSSPVVDLFADATFVSASAQVEKEPNSPSKTEIDLFASQPASVSPTVDFFASPEPVVQTETNFADAARDSKASQPASVSATIDFFASSKLVVQTETNFASAARDIKASQPASVSAPIDPFASAEPVVQTETNFASTKRDSKTVDPFAALPLNSFDGSDFLGATSSRSEPVSSEPSQNPVGGPSSNLDGKSINISTAPAKKNTFQVKSGIWADSLSRGLIDLNISAPNKVSLIDVGVVGGLSDFSNEREKGPAPTYHMGQAMGAGSGLGRTGSQGIGDDFFSQLSGQQYQFGGFQK 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 488092 494271 - CmoCh05G001170.1 Cmo05g00117 382252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00117 649 MobiDBLite consensus disorder prediction 207 222 - -
Cmo05g00117 649 MobiDBLite consensus disorder prediction 223 255 - -
Cmo05g00117 649 PANTHER CLATHRIN INTERACTOR EPSIN 1 106 443 IPR033521 GO:0006623|GO:0030276
Cmo05g00117 649 SUPERFAMILY ENTH/VHS domain 105 191 IPR008942 -
Cmo05g00117 649 MobiDBLite consensus disorder prediction 257 302 - -
Cmo05g00117 649 ProSiteProfiles ENTH domain profile. 20 178 IPR013809 -
Cmo05g00117 649 Pfam ENTH domain 27 173 IPR013809 -
Cmo05g00117 649 CDD ENTH 28 170 - -
Cmo05g00117 649 SUPERFAMILY ENTH/VHS domain 7 84 IPR008942 -
Cmo05g00117 649 MobiDBLite consensus disorder prediction 514 546 - -
Cmo05g00117 649 PANTHER EPSIN/ENT-RELATED 1 84 - -
Cmo05g00117 649 PANTHER CLATHRIN INTERACTOR EPSIN 1 1 84 IPR033521 GO:0006623|GO:0030276
Cmo05g00117 649 PANTHER CLATHRIN INTERACTOR EPSIN 1 424 640 IPR033521 GO:0006623|GO:0030276
Cmo05g00117 649 Gene3D - 24 189 IPR008942 -
Cmo05g00117 649 MobiDBLite consensus disorder prediction 207 333 - -
Cmo05g00117 649 PANTHER EPSIN/ENT-RELATED 106 443 - -
Cmo05g00117 649 PANTHER EPSIN/ENT-RELATED 424 640 - -
Cmo05g00117 649 SMART enth_2 26 178 IPR013809 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00117 K12471 EPN; epsin - csv:101214728 1007.67
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00117 Cmo12g00561 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00117 Cmo-Chr5:488092 Cmo06g01632 Cmo-Chr6:11381172 6.78E-11 dispersed
Cmo12g00561 Cmo-Chr12:3472935 Cmo05g00117 Cmo-Chr5:488092 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g46 . . . . . . . . Cmo05g00117 Cmo12g00561 . Cma05g00111 . Car12g00571 . Cpe07g00544 . Bhi04g00480 . . . Hepe08g1372 . Lcy13g2167 . . . . . . . Cone4ag1645 Cone7ag1303 . . . . . . . . . . . . . . . . . . Cma12g00623 . Car05g00096 Cpe11g00091 . . . . . . . . . . . . . . . Lsi08g01563 Csa02g01858 Chy03g01627 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006203 1 2 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00117 Cmo_Chr05 FPKM 0.020115 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0