Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo05g00118 | ATGATTAACGAATCAATGTTTCTCAATCCCACGCCTCACATTTCATCCTGGGACTCCCTCGACGATCCCGCCGCCGCAATCCCATCATATTTCACCGCGGACAACGTGTCGCCGCTCGATTCGCCGACGGCGGCGGTTATGGACTACGATTCGTTGCTCTGGGAGGATCAAGACTTGCCGGCCATGGTGGACGCCTTCACGTGCGACCATTTCCGGATGTACGAGTTCAAAGTCCGCGCGTGCGCACGTGGGAGGTCGCACGATTGGACCAAATGTCCCTACGCCCACGCCGGCGAGAAGGCTCGCCGCCGGGATCCGAGGAAGTTCAACTATTCCGGCACCGAGTGTCCGGATTTACGTCATGGGTGTTGTATGAAAGGAGACGCTTGTGAGTACGCTCATGGAGTTTTCGAAATTTGGCTCCACCCTGATCGGTACCGGACTCAGCCATGCCGTGACGGAGCAGGCTGCCGAAGGCGGGTCTGTTTCTTCGCCCACTCGTCGGAGCAACTCCGGATTCCAGGGAAACAGAGCATCAGGTCTCCCCGAGGCAGGGAAATCGCCGCCTCTGCCGTATCATCTCCGACGTCCATCCTAATATCATCATCGTCGGACTCGCCGCCTATGTCTCCGATCAGCCCTTTAACCACCGGTGGGGAATCGTTCAGTAGATTAGTCGCAATGATGCACAATCTCCACTTTGATGAATTAAAAACGAATCCGGGGATCTCCGGCTTCGGTCCAAATTTCCGACGAAACTCCGGCGCATTTGATTCATGGGACAGAGATAACGAAGAAGAACCAGCAATGGAGAGAGTAGAATCAGGGAGAAACCTACGAGCCCAAATGTACGCGAAATTGATGAGAGAGAACTCAGTGGAGCGTGTCCGGCCGCTGATATTGGCCGGATCTCGGAACTAA | 921 | 55.16 | MINESMFLNPTPHISSWDSLDDPAAAIPSYFTADNVSPLDSPTAAVMDYDSLLWEDQDLPAMVDAFTCDHFRMYEFKVRACARGRSHDWTKCPYAHAGEKARRRDPRKFNYSGTECPDLRHGCCMKGDACEYAHGVFEIWLHPDRYRTQPCRDGAGCRRRVCFFAHSSEQLRIPGKQSIRSPRGREIAASAVSSPTSILISSSSDSPPMSPISPLTTGGESFSRLVAMMHNLHFDELKTNPGISGFGPNFRRNSGAFDSWDRDNEEEPAMERVESGRNLRAQMYAKLMRENSVERVRPLILAGSRN | 306 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 495566 | 496486 | - | CmoCh05G001180.1 | Cmo05g00118 | 382253 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo05g00118 | 306 | Gene3D | - | 107 | 178 | - | - | |
| Cmo05g00118 | 306 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 | 9 | 242 | - | - | |
| Cmo05g00118 | 306 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 | 251 | 299 | - | - | |
| Cmo05g00118 | 306 | SMART | c3hfinal6 | 145 | 168 | IPR000571 | GO:0046872 | |
| Cmo05g00118 | 306 | SMART | c3hfinal6 | 110 | 136 | IPR000571 | GO:0046872 | |
| Cmo05g00118 | 306 | PANTHER | UNKEMPT FAMILY MEMBER | 251 | 299 | IPR045234 | - | |
| Cmo05g00118 | 306 | PANTHER | UNKEMPT FAMILY MEMBER | 9 | 242 | IPR045234 | - | |
| Cmo05g00118 | 306 | ProSiteProfiles | Zinc finger C3H1-type profile. | 110 | 137 | IPR000571 | GO:0046872 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo05g00118 | Cmo09g00324 | CCT | |
| Cmo05g00118 | Cmo09g00324 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo05g00118 | Cmo-Chr5:495566 | Cmo10g00717 | Cmo-Chr10:3287572 | 2.47E-74 | dispersed | |
| Cmo01g01815 | Cmo-Chr1:13306877 | Cmo05g00118 | Cmo-Chr5:495566 | 1.12E-78 | wgd | |
| Cmo12g00560 | Cmo-Chr12:3468989 | Cmo05g00118 | Cmo-Chr5:495566 | 7.50E-166 | wgd | |
| Cmo05g00118 | Cmo-Chr5:495566 | Cmo09g00324 | Cmo-Chr9:1409001 | 7.00E-83 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo05g00118 | - | - | csv:101214248 | 515.383 |