Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo05g00119 | ATGGAAGATCAGTACAACCCTCATGGTGATAGCTCGAGGGGAAATTTCTTGTTCACTTCAGTCCCTGTTTTGGCCACAAATTCTTCTTCTCCTGGGGGCAATTTCGTAACTAGACACTCTTCTTCAAATGGCGGAGGCGCCTCCCTTCTTGGGAGTCAGATCATGGCGGTAAACACTAATCTCGGTGGTGACTGTAACTTTCCGGCGTCGGATCGTGTTGTAAAAGTGGAGCCCAGTGGCTCCCAGTCTCAGAATCATCATCATCATCATCAAGTTCATGACTTTCATTACCATTTAATGAGAGAGTTTCAAATCAGTAGTGGTGGTAATAATAGTAACGATTTGGGTTCCATGAAAGCCAAAATCATTTCCCATTCTCTATTCTCTAACCTCCTCCAAGCCTTCTTGGATTGCCAAAAGGTTGGAGCTCCTCCAGAGGTAGCGGCGAAGCTTAGTTCGGTATGGGAGGAATTTGAACAGCGGCGGCGGTCTTCTATGGCGTCGACCGGCGGTTCAACTGACCCAGAACTGGATCACTTCATGATGTGTTTAATAATGTCGACAGAAGAGAAGGGATGGTCGGAGGAGGAGCAGGAGAAGAGCAGGGAAGCAGAAAGAGAGGTAGGGGATCAAATGGACCCACGGGCTGAAGAGCGAGAGCTGAAGAATCACTTACTGAAGAAGTACAGTGGGTATCTAAGCAGTCTAAAGCAAGAGCTTTCAAAGAAAAAGAAGAAAGGGAAGCTCCCAAAAGACGCAAGGCAAGAGCTGCTCCGATGGTGGGAATTGCACAACAAATGGCCATACCCTTCGGAGGCTGAAAAGTTGGCGCTGGCGGAATCAACTGGGCTTGACCAGAAACAGATAAATAATTGGTTCATAAACCAGAGGAAAAGGCACTGGAAGCCGTCTGAGGATGTGCAGTTTATGGGCATGGAGGGGTTTTATCATCCCAATGCTGCTGCTGCTGCTGCTGCTGCCGCCTTTTACTTCGATGGCCATTTCATGGTTGCTGCTAGCCTATCCTATCCTATGTTTAAAAAAAGGGCCCACCATGCTCTCGTTAAAGCCCAGCCCAAATATCATTTGAACCAACGAACCACCATCGAACTTCATCGAAGTTCCAATTTTGAAGGATTCACAACCAGCCACCATGATCCACAGAAGCCTCTTCTCCCGCTGCTTTCTCCCATCTCTTCGCCTCCCTTCTTCCTCGTCAAAGGTTCGAGAAAATCCCTTGCCTTTCTCTCCTTTATTTTCGGATTATTTTTTCATGTAAAAACTTTTCAACGTATTAATTATATTATACTGAGCCAATCGCTAAACGGTCCCCCAAGAAGGCGTTGGACGTCTAGAAACCGTCGGGCGTTCCATGAAAACGAAATGGTGCAGCTTGGAGGAGGCTGCCATGGCGATGCGTTTAGGGCAATATCTTCCATGCCGGAGCCTTGCCGATCATCGCCCATCAGTGATGGTGATAGCTGCGATTTTGATTGGGATAGTCTTGGATTTGGGCTGATGCCAACAGATTATATGTATATTATGAAATGCGCTATAAATGAGAGTTTTGAACGAGGTCAAATCAGCCGTTATGGGAACATTGAGCTTAGCCCTTCTGCTGGGGTTCTAAATTATGGCCAGGGATTGTTTGAAGGTCTAAAAGCATATAGGAAAGACGATGGAGGGGTTCTTCTGTTTCGTCCACACGAAAACGCCCTCCGTATGAGGGCTGGCGCTGACCGAATGTGTATGCCGTCGCCCACCGTCGAGCAATTTGTTGATGCTGTGAAGCAAACTACCATTGCTAATAGGCGTTGGGTCCCTCCGCCGGGGAAAGGGTCACTTTACATAAGGCCTTTGCTCATTGGAACGGGTCCCATTCTTGGGTTGGCACCCTCCCCTGAGTATACTTTTCTAGTGTTTGCTTCCCCTGTTCGCAACTATTTTAAGGAAGGTTCGGCGCCCTTGAACCTATATGTCGAGAACGAATTCGACCGAGCATCTCGTGGCGGAACCGGAGGTGTGAAAAGCATTTCGAATTATGCTCCGGTGTTGAAAGCTATAACCCGAGCGAAAAGCCGAGGCTTTTCTGATGTGTTATACCTTGATTCAGTGAATAAGAGAGATGTGGAGGAAGTTTCTTCCTGCAACATTTTTATTGTAAAGGGCAATGTTATTTCAACTCCTGCTACACATGGAACGATTCTTCCAGGAGTAACCCGGAAAAGCATCATTGACATTGCCCGTGATCGCGGTTACGAGGTCGAGGAACGGGCTATTAACGTGGAAGAAGTGTTGGACGCTCGTGAAGTTTTCTGCACGGGAACGGCTGTCGGGGTGGCTCCTGTTGGGAGCATCACATGTATGGATAGAAGGATTGAGTACCAAACAGGTGCGGAGACGACATGCCAGGAACTGTATTCAACTCTTGTTGGGATTCAAACTGGAACCATTGAGGATAAGATGGGATGGACTGTTGAGATCTGTTGA | 2490 | 47.55 | MEDQYNPHGDSSRGNFLFTSVPVLATNSSSPGGNFVTRHSSSNGGGASLLGSQIMAVNTNLGGDCNFPASDRVVKVEPSGSQSQNHHHHHQVHDFHYHLMREFQISSGGNNSNDLGSMKAKIISHSLFSNLLQAFLDCQKVGAPPEVAAKLSSVWEEFEQRRRSSMASTGGSTDPELDHFMMCLIMSTEEKGWSEEEQEKSREAEREVGDQMDPRAEERELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQELLRWWELHNKWPYPSEAEKLALAESTGLDQKQINNWFINQRKRHWKPSEDVQFMGMEGFYHPNAAAAAAAAAFYFDGHFMVAASLSYPMFKKRAHHALVKAQPKYHLNQRTTIELHRSSNFEGFTTSHHDPQKPLLPLLSPISSPPFFLVKGSRKSLAFLSFIFGLFFHVKTFQRINYIILSQSLNGPPRRRWTSRNRRAFHENEMVQLGGGCHGDAFRAISSMPEPCRSSPISDGDSCDFDWDSLGFGLMPTDYMYIMKCAINESFERGQISRYGNIELSPSAGVLNYGQGLFEGLKAYRKDDGGVLLFRPHENALRMRAGADRMCMPSPTVEQFVDAVKQTTIANRRWVPPPGKGSLYIRPLLIGTGPILGLAPSPEYTFLVFASPVRNYFKEGSAPLNLYVENEFDRASRGGTGGVKSISNYAPVLKAITRAKSRGFSDVLYLDSVNKRDVEEVSSCNIFIVKGNVISTPATHGTILPGVTRKSIIDIARDRGYEVEERAINVEEVLDAREVFCTGTAVGVAPVGSITCMDRRIEYQTGAETTCQELYSTLVGIQTGTIEDKMGWTVEIC | 829 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 501389 | 509135 | + | CmoCh05G001190.1 | Cmo05g00119 | 382254 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo05g00119 | 829 | Gene3D | - | 485 | 656 | IPR043131 | - | |
Cmo05g00119 | 829 | SUPERFAMILY | Homeodomain-like | 241 | 313 | IPR009057 | - | |
Cmo05g00119 | 829 | ProSitePatterns | 'Homeobox' domain signature. | 278 | 301 | IPR017970 | GO:0000981|GO:0006355 | |
Cmo05g00119 | 829 | PANTHER | BRANCHED-CHAIN-AMINO-ACID AMINOTRANSFERASE | 466 | 828 | - | - | |
Cmo05g00119 | 829 | SMART | KNOX1_2 | 116 | 160 | IPR005540 | GO:0003677|GO:0005634 | |
Cmo05g00119 | 829 | Pfam | KNOX1 domain | 118 | 159 | IPR005540 | GO:0003677|GO:0005634 | |
Cmo05g00119 | 829 | SUPERFAMILY | D-aminoacid aminotransferase-like PLP-dependent enzymes | 493 | 825 | IPR036038 | GO:0003824 | |
Cmo05g00119 | 829 | ProSitePatterns | Aminotransferases class-IV signature. | 712 | 741 | IPR018300 | GO:0003824 | |
Cmo05g00119 | 829 | PANTHER | AMINO ACID AMINOTRANSFERASE | 466 | 828 | IPR005786 | GO:0004084|GO:0009081 | |
Cmo05g00119 | 829 | CDD | homeodomain | 252 | 304 | IPR001356 | GO:0003677 | |
Cmo05g00119 | 829 | TIGRFAM | ilvE_II: branched-chain amino acid aminotransferase | 524 | 828 | IPR005786 | GO:0004084|GO:0009081 | |
Cmo05g00119 | 829 | ProSiteProfiles | 'Homeobox' domain profile. | 240 | 303 | IPR001356 | GO:0003677 | |
Cmo05g00119 | 829 | MobiDBLite | consensus disorder prediction | 191 | 217 | - | - | |
Cmo05g00119 | 829 | Pfam | Amino-transferase class IV | 548 | 786 | IPR001544 | GO:0003824 | |
Cmo05g00119 | 829 | SMART | ELK_2 | 220 | 241 | IPR005539 | GO:0003677 | |
Cmo05g00119 | 829 | ProSiteProfiles | ELK domain profile. | 220 | 240 | IPR005539 | GO:0003677 | |
Cmo05g00119 | 829 | CDD | BCAT_beta_family | 535 | 816 | IPR033939 | GO:0004084|GO:0009081 | |
Cmo05g00119 | 829 | Gene3D | - | 237 | 309 | - | - | |
Cmo05g00119 | 829 | Gene3D | - | 657 | 828 | IPR043132 | - | |
Cmo05g00119 | 829 | SMART | HOX_1 | 242 | 307 | IPR001356 | GO:0003677 | |
Cmo05g00119 | 829 | Pfam | Homeobox KN domain | 260 | 299 | IPR008422 | GO:0003677|GO:0006355 | |
Cmo05g00119 | 829 | Pfam | ELK domain | 220 | 241 | IPR005539 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g00119 | Cmo-Chr5:501389 | Cmo12g00559 | Cmo-Chr12:3457585 | 4.04E-101 | dispersed | |
Cmo01g01817 | Cmo-Chr1:13322815 | Cmo05g00119 | Cmo-Chr5:501389 | 8.09E-79 | wgd | |
Cmo12g00558 | Cmo-Chr12:3436529 | Cmo05g00119 | Cmo-Chr5:501389 | 0 | wgd | |
Cmo03g00922 | Cmo-Chr3:7035212 | Cmo05g00119 | Cmo-Chr5:501389 | 1.51E-170 | wgd | |
Cmo05g00119 | Cmo-Chr5:501389 | Cmo07g00627 | Cmo-Chr7:2828972 | 8.82E-172 | wgd | |
Cmo05g00119 | Cmo-Chr5:501389 | Cmo09g00320 | Cmo-Chr9:1391789 | 3.14E-86 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9774 | PF01063 | Aminotran_4 | 4.20E-39 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo05g00119 | K00826 | - | csv:101214004 | 653.284 |