Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00119 ATGGAAGATCAGTACAACCCTCATGGTGATAGCTCGAGGGGAAATTTCTTGTTCACTTCAGTCCCTGTTTTGGCCACAAATTCTTCTTCTCCTGGGGGCAATTTCGTAACTAGACACTCTTCTTCAAATGGCGGAGGCGCCTCCCTTCTTGGGAGTCAGATCATGGCGGTAAACACTAATCTCGGTGGTGACTGTAACTTTCCGGCGTCGGATCGTGTTGTAAAAGTGGAGCCCAGTGGCTCCCAGTCTCAGAATCATCATCATCATCATCAAGTTCATGACTTTCATTACCATTTAATGAGAGAGTTTCAAATCAGTAGTGGTGGTAATAATAGTAACGATTTGGGTTCCATGAAAGCCAAAATCATTTCCCATTCTCTATTCTCTAACCTCCTCCAAGCCTTCTTGGATTGCCAAAAGGTTGGAGCTCCTCCAGAGGTAGCGGCGAAGCTTAGTTCGGTATGGGAGGAATTTGAACAGCGGCGGCGGTCTTCTATGGCGTCGACCGGCGGTTCAACTGACCCAGAACTGGATCACTTCATGATGTGTTTAATAATGTCGACAGAAGAGAAGGGATGGTCGGAGGAGGAGCAGGAGAAGAGCAGGGAAGCAGAAAGAGAGGTAGGGGATCAAATGGACCCACGGGCTGAAGAGCGAGAGCTGAAGAATCACTTACTGAAGAAGTACAGTGGGTATCTAAGCAGTCTAAAGCAAGAGCTTTCAAAGAAAAAGAAGAAAGGGAAGCTCCCAAAAGACGCAAGGCAAGAGCTGCTCCGATGGTGGGAATTGCACAACAAATGGCCATACCCTTCGGAGGCTGAAAAGTTGGCGCTGGCGGAATCAACTGGGCTTGACCAGAAACAGATAAATAATTGGTTCATAAACCAGAGGAAAAGGCACTGGAAGCCGTCTGAGGATGTGCAGTTTATGGGCATGGAGGGGTTTTATCATCCCAATGCTGCTGCTGCTGCTGCTGCTGCCGCCTTTTACTTCGATGGCCATTTCATGGTTGCTGCTAGCCTATCCTATCCTATGTTTAAAAAAAGGGCCCACCATGCTCTCGTTAAAGCCCAGCCCAAATATCATTTGAACCAACGAACCACCATCGAACTTCATCGAAGTTCCAATTTTGAAGGATTCACAACCAGCCACCATGATCCACAGAAGCCTCTTCTCCCGCTGCTTTCTCCCATCTCTTCGCCTCCCTTCTTCCTCGTCAAAGGTTCGAGAAAATCCCTTGCCTTTCTCTCCTTTATTTTCGGATTATTTTTTCATGTAAAAACTTTTCAACGTATTAATTATATTATACTGAGCCAATCGCTAAACGGTCCCCCAAGAAGGCGTTGGACGTCTAGAAACCGTCGGGCGTTCCATGAAAACGAAATGGTGCAGCTTGGAGGAGGCTGCCATGGCGATGCGTTTAGGGCAATATCTTCCATGCCGGAGCCTTGCCGATCATCGCCCATCAGTGATGGTGATAGCTGCGATTTTGATTGGGATAGTCTTGGATTTGGGCTGATGCCAACAGATTATATGTATATTATGAAATGCGCTATAAATGAGAGTTTTGAACGAGGTCAAATCAGCCGTTATGGGAACATTGAGCTTAGCCCTTCTGCTGGGGTTCTAAATTATGGCCAGGGATTGTTTGAAGGTCTAAAAGCATATAGGAAAGACGATGGAGGGGTTCTTCTGTTTCGTCCACACGAAAACGCCCTCCGTATGAGGGCTGGCGCTGACCGAATGTGTATGCCGTCGCCCACCGTCGAGCAATTTGTTGATGCTGTGAAGCAAACTACCATTGCTAATAGGCGTTGGGTCCCTCCGCCGGGGAAAGGGTCACTTTACATAAGGCCTTTGCTCATTGGAACGGGTCCCATTCTTGGGTTGGCACCCTCCCCTGAGTATACTTTTCTAGTGTTTGCTTCCCCTGTTCGCAACTATTTTAAGGAAGGTTCGGCGCCCTTGAACCTATATGTCGAGAACGAATTCGACCGAGCATCTCGTGGCGGAACCGGAGGTGTGAAAAGCATTTCGAATTATGCTCCGGTGTTGAAAGCTATAACCCGAGCGAAAAGCCGAGGCTTTTCTGATGTGTTATACCTTGATTCAGTGAATAAGAGAGATGTGGAGGAAGTTTCTTCCTGCAACATTTTTATTGTAAAGGGCAATGTTATTTCAACTCCTGCTACACATGGAACGATTCTTCCAGGAGTAACCCGGAAAAGCATCATTGACATTGCCCGTGATCGCGGTTACGAGGTCGAGGAACGGGCTATTAACGTGGAAGAAGTGTTGGACGCTCGTGAAGTTTTCTGCACGGGAACGGCTGTCGGGGTGGCTCCTGTTGGGAGCATCACATGTATGGATAGAAGGATTGAGTACCAAACAGGTGCGGAGACGACATGCCAGGAACTGTATTCAACTCTTGTTGGGATTCAAACTGGAACCATTGAGGATAAGATGGGATGGACTGTTGAGATCTGTTGA 2490 47.55 MEDQYNPHGDSSRGNFLFTSVPVLATNSSSPGGNFVTRHSSSNGGGASLLGSQIMAVNTNLGGDCNFPASDRVVKVEPSGSQSQNHHHHHQVHDFHYHLMREFQISSGGNNSNDLGSMKAKIISHSLFSNLLQAFLDCQKVGAPPEVAAKLSSVWEEFEQRRRSSMASTGGSTDPELDHFMMCLIMSTEEKGWSEEEQEKSREAEREVGDQMDPRAEERELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQELLRWWELHNKWPYPSEAEKLALAESTGLDQKQINNWFINQRKRHWKPSEDVQFMGMEGFYHPNAAAAAAAAAFYFDGHFMVAASLSYPMFKKRAHHALVKAQPKYHLNQRTTIELHRSSNFEGFTTSHHDPQKPLLPLLSPISSPPFFLVKGSRKSLAFLSFIFGLFFHVKTFQRINYIILSQSLNGPPRRRWTSRNRRAFHENEMVQLGGGCHGDAFRAISSMPEPCRSSPISDGDSCDFDWDSLGFGLMPTDYMYIMKCAINESFERGQISRYGNIELSPSAGVLNYGQGLFEGLKAYRKDDGGVLLFRPHENALRMRAGADRMCMPSPTVEQFVDAVKQTTIANRRWVPPPGKGSLYIRPLLIGTGPILGLAPSPEYTFLVFASPVRNYFKEGSAPLNLYVENEFDRASRGGTGGVKSISNYAPVLKAITRAKSRGFSDVLYLDSVNKRDVEEVSSCNIFIVKGNVISTPATHGTILPGVTRKSIIDIARDRGYEVEERAINVEEVLDAREVFCTGTAVGVAPVGSITCMDRRIEYQTGAETTCQELYSTLVGIQTGTIEDKMGWTVEIC 829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 501389 509135 + CmoCh05G001190.1 Cmo05g00119 382254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00119 829 Gene3D - 485 656 IPR043131 -
Cmo05g00119 829 SUPERFAMILY Homeodomain-like 241 313 IPR009057 -
Cmo05g00119 829 ProSitePatterns 'Homeobox' domain signature. 278 301 IPR017970 GO:0000981|GO:0006355
Cmo05g00119 829 PANTHER BRANCHED-CHAIN-AMINO-ACID AMINOTRANSFERASE 466 828 - -
Cmo05g00119 829 SMART KNOX1_2 116 160 IPR005540 GO:0003677|GO:0005634
Cmo05g00119 829 Pfam KNOX1 domain 118 159 IPR005540 GO:0003677|GO:0005634
Cmo05g00119 829 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 493 825 IPR036038 GO:0003824
Cmo05g00119 829 ProSitePatterns Aminotransferases class-IV signature. 712 741 IPR018300 GO:0003824
Cmo05g00119 829 PANTHER AMINO ACID AMINOTRANSFERASE 466 828 IPR005786 GO:0004084|GO:0009081
Cmo05g00119 829 CDD homeodomain 252 304 IPR001356 GO:0003677
Cmo05g00119 829 TIGRFAM ilvE_II: branched-chain amino acid aminotransferase 524 828 IPR005786 GO:0004084|GO:0009081
Cmo05g00119 829 ProSiteProfiles 'Homeobox' domain profile. 240 303 IPR001356 GO:0003677
Cmo05g00119 829 MobiDBLite consensus disorder prediction 191 217 - -
Cmo05g00119 829 Pfam Amino-transferase class IV 548 786 IPR001544 GO:0003824
Cmo05g00119 829 SMART ELK_2 220 241 IPR005539 GO:0003677
Cmo05g00119 829 ProSiteProfiles ELK domain profile. 220 240 IPR005539 GO:0003677
Cmo05g00119 829 CDD BCAT_beta_family 535 816 IPR033939 GO:0004084|GO:0009081
Cmo05g00119 829 Gene3D - 237 309 - -
Cmo05g00119 829 Gene3D - 657 828 IPR043132 -
Cmo05g00119 829 SMART HOX_1 242 307 IPR001356 GO:0003677
Cmo05g00119 829 Pfam Homeobox KN domain 260 299 IPR008422 GO:0003677|GO:0006355
Cmo05g00119 829 Pfam ELK domain 220 241 IPR005539 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00119 Cmo-Chr5:501389 Cmo12g00559 Cmo-Chr12:3457585 4.04E-101 dispersed
Cmo01g01817 Cmo-Chr1:13322815 Cmo05g00119 Cmo-Chr5:501389 8.09E-79 wgd
Cmo12g00558 Cmo-Chr12:3436529 Cmo05g00119 Cmo-Chr5:501389 0 wgd
Cmo03g00922 Cmo-Chr3:7035212 Cmo05g00119 Cmo-Chr5:501389 1.51E-170 wgd
Cmo05g00119 Cmo-Chr5:501389 Cmo07g00627 Cmo-Chr7:2828972 8.82E-172 wgd
Cmo05g00119 Cmo-Chr5:501389 Cmo09g00320 Cmo-Chr9:1391789 3.14E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9774 PF01063 Aminotran_4 4.20E-39 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00119 K00826 - csv:101214004 653.284