Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00134 ATGCCCATCTACCACCCCTCCATTTGTACACAACGGGATCCCAAGCTCCTCGTCGGCTGCGGCGCGCACATTCTAGATCTCCAAACTGTGGTCAAAGATGGAATTCTTGGCGGCGGAGGCGGGGGGGTAATCGCCGCCGATGGCGGTGCCCAGAAATTGGATCTCAAGGAGATGATTGAAGAGCTGGAGTCGTCCATAGAGGTCCCATCGGTGTTCATTTGCCCAATCTCGCTCGAGCCCATGCAAGATCCAGTCACCCTCTGCTCCGGGCAGACCTACGAGCGGTCCAACATTCTCAAATGGTTCTCTTTAGGCCACTTGACTTGTCCCACAACAATGCAAGAGCTTTGGGACGATTCCGTCACACCGAATCGGACCCTTCACCAGCTGATTCACACCTGGTTTTCGCAGAAGTACTTAGCATTGAAGAAAAGATCAGAGGACGTGCAGGGGAGAGTTTTAGAGCTCTTGGATTCGTTGAAGAAGGTCAAGGGCCAAGCTAGGGTTCAGTCCCTTAAGGATCTCCGACATGTCGTCACCGCCCATTCCTCCGCCAAGAAGATGGTGGTCGACAACGGCGGTGTTGCTCTAATCTCCTCTCTTTTGGGTTCTTTCACTTCCCACGCAGTTGGGTCGGAAGGCGTGGGGATTCTCGTCAATTTGGATCTGAATTCGGAGTTGAAGAAGAATCTGATTCAACCCACCAGAATATCCCTAATTGCAGATATTTTAAACGAAGGGTCCATCGAAACCAAGATTAATTGCACCAAATTCATCAAGATGTTGACGGAGGGCGATGCTTCAACAATAGAGAACGTTTCGAGTTTAAGTCTCCTCGTCGGATTGTTGAGAATGGTGAAGGATCAAAGACATCCAAACGGAGTAACCGCCGCACTCGCTTTACTCCGAACGCTTTGTTCAAACGAATCAATCAGAAAGCAACTCGTTGGCATCGGTGCCGTCGCGAAACTCGGCGGCGCTCTCTCCGGCTTAAACGCCGAAAGCTTGGAGTCAGCGCTTTATATTCTCGACGTTTTGTCGTCCCTTCCAGAGGGGAGATTAGCGTTGAAGAATTGTGAAGATACAGTTAGAAATTTGGTGAAATTGTTAATGAAAGTATCGGAGATTTGTACAAGATTTGCGCTATCGATTTTGTGGGCGGTGTTCAAGCTAGCGCCGGAGGAATGTTCGGTGCTTGCGGTGGAGGCGGGATTAGCGGCAAAGTTGCTGCTTGTGATCCAAAGTGGGTTCAATCCAGAACTGAAACAGAGATCTGCAGAGCTATTGAAATTTGTTTGCCACGTGAGAATGCGTCGTCGACTCCGAGGATTCACGTGCAGAGCAAGTGCAGATGGAGGGAGGTTGGGTAATTATCAGGCACGAGTACAGAAGATGGCCAGACTGAAACAAGCTAAAGATGAAGCTGAAAGGGAAGTGGCCCAGTATCGTGCCCACATGGAGGCTCAATATCAGAACAAACTCTCTGAGAATCATCCGAACGAGTTTCAAAGGATGTTGTTCATATGCTTCTCCAATATGTTGCCTCTCCCAGAATTTAGAACAACGGGTAATTCGTAA 1578 49.3 MPIYHPSICTQRDPKLLVGCGAHILDLQTVVKDGILGGGGGGVIAADGGAQKLDLKEMIEELESSIEVPSVFICPISLEPMQDPVTLCSGQTYERSNILKWFSLGHLTCPTTMQELWDDSVTPNRTLHQLIHTWFSQKYLALKKRSEDVQGRVLELLDSLKKVKGQARVQSLKDLRHVVTAHSSAKKMVVDNGGVALISSLLGSFTSHAVGSEGVGILVNLDLNSELKKNLIQPTRISLIADILNEGSIETKINCTKFIKMLTEGDASTIENVSSLSLLVGLLRMVKDQRHPNGVTAALALLRTLCSNESIRKQLVGIGAVAKLGGALSGLNAESLESALYILDVLSSLPEGRLALKNCEDTVRNLVKLLMKVSEICTRFALSILWAVFKLAPEECSVLAVEAGLAAKLLLVIQSGFNPELKQRSAELLKFVCHVRMRRRLRGFTCRASADGGRLGNYQARVQKMARLKQAKDEAEREVAQYRAHMEAQYQNKLSENHPNEFQRMLFICFSNMLPLPEFRTTGNS 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 584134 587170 - CmoCh05G001340.1 Cmo05g00134 382269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00134 525 PANTHER WDSAM1 PROTEIN 42 435 IPR045185 GO:0061630
Cmo05g00134 525 SUPERFAMILY RING/U-box 64 138 - -
Cmo05g00134 525 Pfam Vacuolar (H+)-ATPase G subunit 459 497 IPR005124 GO:0016471|GO:0046961|GO:1902600
Cmo05g00134 525 CDD RING-Ubox_PUB 72 114 IPR045210 -
Cmo05g00134 525 Gene3D - 141 462 IPR011989 -
Cmo05g00134 525 SUPERFAMILY ARM repeat 247 434 IPR016024 -
Cmo05g00134 525 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 140 IPR013083 -
Cmo05g00134 525 ProSiteProfiles U-box domain profile. 67 141 IPR003613 GO:0004842|GO:0016567
Cmo05g00134 525 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 42 435 - -
Cmo05g00134 525 Gene3D F1F0 ATP synthase subunit B, membrane domain 463 493 - -
Cmo05g00134 525 SUPERFAMILY ARM repeat 156 276 IPR016024 -
Cmo05g00134 525 SMART Ubox_2 71 134 IPR003613 GO:0004842|GO:0016567
Cmo05g00134 525 Coils Coil 458 492 - -
Cmo05g00134 525 Pfam U-box domain 68 138 IPR003613 GO:0004842|GO:0016567
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00134 Cmo09g00300 CCT
Cmo01g01834 Cmo05g00134 CCT
Cmo05g00134 Cmo12g00545 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00134 Cmo-Chr5:584134 Cmo04g00519 Cmo-Chr4:2579230 3.56E-36 dispersed
Cmo06g00370 Cmo-Chr6:1788887 Cmo05g00134 Cmo-Chr5:584134 2.50E-09 dispersed
Cmo14g00199 Cmo-Chr14:901066 Cmo05g00134 Cmo-Chr5:584134 4.79E-09 dispersed
Cmo01g01834 Cmo-Chr1:13404018 Cmo05g00134 Cmo-Chr5:584134 0 wgd
Cmo12g00545 Cmo-Chr12:3336364 Cmo05g00134 Cmo-Chr5:584134 0 wgd
Cmo05g00134 Cmo-Chr5:584134 Cmo09g00300 Cmo-Chr9:1303514 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00134 - - csv:101211594 718.768