Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00140 ATGTGGGCGCATAGCGACAACTTCAAATCTCAGACCCACTTCTCTTGGGAGCTCTGTCTGAAGAAACCGATTGAGCTCGGAATAGGAAGGAAGGGACTGGGGAAAGAGTGGAAGTTCTCACGTTGCAAAGACCATCAAAGTTCTCAACCCATTCTGGAAAAGATGCTGTGCGCTTGTTCAGGAGAGCAATTCAAGTTCGAAGAGCCACCACAGTCCCCGGAGTCACTAGCGACGAGGGATTTCTCGGCCAGTTGTCTTTCCTCGAGAACTGGAGACTGGGATTTGAAATTTGAAGATTCTCAAGTAGATGAAGTTGAATCCACTTTAAAAGAAGCCCTCTCATTAAACTACGAGGAAGCCAGAGCTTTACTGGGGAGGCTTGAATATCAGAGAGGAAATTTTGATGCTGCCCTGCAGGTATTTCAAGGTATAGACATTAGATCCTTGACGCCAAGAATGGTTAAGGCAATCACCGAAAAGATAAGAGAGGAAAAACCTCGTCCTAAAGGTGACAGTGCCCCCCCTACTGGTGTACTGTCCATGCATTCTGTTAGCCTACTACTTGAAGCAATTTTACTCAAGGCAAAATCACTGGAGGAACTTGGCAGATATATAGAGTCTGCTAAAGAATGCAGGATAATTCTTGATACAGTGGAATCAGCTCTGCCTAATGGAATGCCCGAGTTTATTGGCGAAGACTGCAAATTTCAGGAAATGTTACACAAAGCTTTGGAATTACTGCCTACTTTGTGGATTAAGGGTGGTTATCTCGACGAGGCCATAAACGCCTACCGCCGAGTCCTTGTTAAACCATGGAATCTAGATCCAAACAAGTTGGCTGCCATAGAGAAAGAATTGGCTGGCACATTACTCTACGGAGGTGTTGAAGCAAGCCTTCCCCTTAAGTTTTATGTATTCGGTCCAAGAACACCTAAAAACAATGTAGAAGAAGCAATCCTTTTGTTGCTAATACTCATGAGGAAAGTGGTGACGCAGGAAATAAACTGGGATCCAGAGATTATGAATCATCTGACTTTTGCACTTTCTATCACAAGGCAGTTTGAATTACTGGCTGAGCACGTGGAGCAGATTCTTCCTGGAATATATAGTCGAGCTGAGAGGTGGTACTTTCTTGCTCTATGTTACAATGCGGCAGGACAGAATGAAACAGCTTTGAACCTTCTAATGAAGGTCTGCGGTTCCTCTGAAGTAAAGCAGAAGCCCCATTTTCATTCATTTTTGTTGCTTGCAAAATTGTGTTCAGAGGATACAAAATATGCACGTGATGGAATAAAATGTGCTAGTAGAATGATCGATATGGCCAGTGAACACAGTAAACATTTCAATGCTGAATCCCACAAATTTTTAGGTGTTTGCTATGGGAATGCAGCCAGAGCTTCTGTATCAGACTCTGAAAGAACTCTTTTCCAAAAAGAATCATTGAACTCCCTAAGAGTTTCTTCTCTCGGTAGGAGGCATGATCCAGAAGTAATGTTCAACATTAGCTTGGAAAATGCTGTGCAGAGAAATCTTGATGTTGCCTTCTACAGTGCAATGGCGTACTCAAATATGGTGGCTGATGGTTCCGGAAGAGGTTGGAAGCTTTTGACCCTCATACTTTCAGCTGAGAGGCGACTCAAGGACGCTGAAACCATAGTTGATTTTGCTTTGGACGAAGCTGAGAGGATGGATCAATTGGAATTTCTTCGATTGAAAGCTGTCCTCAAAATTGCTCAGGAACAGCCAAAGCAAGCAATAGAAACCTACAGAATCTTGCTAGCACTAATTCAATCACGAGATGAACTTCAGCTTCAGGCTACGAACCTTAACCAATCCAAGGACTTGGAACTAGAGGCAGCGGCAGAACGTGACTTAGAACGGGCAGCCTGGCAGGATTTGGCTGCCATATATTCAAAGCTTGCTTCCTGGGCGGATGCAGAAATTTGCCTGAACAAAGCCAAAACATTAAATGTTCATTGCCCCAGAGGTTGGCATACAACAGGCAAGTTTTTTGAGGCTCGATCGTTACACAAGGAAGCACTTGTTTCATACTCTGTCTCTCTATCGGTTGATCCTGATTATATTCCGAGTATCATCTCAACAGCAGAAGTATTGATGAAATGCGGTAACCAATCACTTCCAATTGCACGCAGCTTGTTGATGAATGCTGTAAGATTGGATCCTACAAGCCATGAAGCATGGTTCAACCTTGGAGTGCTCTCCAAAATGGAAGGTTTGTTGCTTCAAGCTGCAGATTTTTTTCAAGCCGCACATGAACTCCAATTATCAGCTCCTCCTCAGAGTTTCATCTAA 2313 43.58 MWAHSDNFKSQTHFSWELCLKKPIELGIGRKGLGKEWKFSRCKDHQSSQPILEKMLCACSGEQFKFEEPPQSPESLATRDFSASCLSSRTGDWDLKFEDSQVDEVESTLKEALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDIRSLTPRMVKAITEKIREEKPRPKGDSAPPTGVLSMHSVSLLLEAILLKAKSLEELGRYIESAKECRIILDTVESALPNGMPEFIGEDCKFQEMLHKALELLPTLWIKGGYLDEAINAYRRVLVKPWNLDPNKLAAIEKELAGTLLYGGVEASLPLKFYVFGPRTPKNNVEEAILLLLILMRKVVTQEINWDPEIMNHLTFALSITRQFELLAEHVEQILPGIYSRAERWYFLALCYNAAGQNETALNLLMKVCGSSEVKQKPHFHSFLLLAKLCSEDTKYARDGIKCASRMIDMASEHSKHFNAESHKFLGVCYGNAARASVSDSERTLFQKESLNSLRVSSLGRRHDPEVMFNISLENAVQRNLDVAFYSAMAYSNMVADGSGRGWKLLTLILSAERRLKDAETIVDFALDEAERMDQLEFLRLKAVLKIAQEQPKQAIETYRILLALIQSRDELQLQATNLNQSKDLELEAAAERDLERAAWQDLAAIYSKLASWADAEICLNKAKTLNVHCPRGWHTTGKFFEARSLHKEALVSYSVSLSVDPDYIPSIISTAEVLMKCGNQSLPIARSLLMNAVRLDPTSHEAWFNLGVLSKMEGLLLQAADFFQAAHELQLSAPPQSFI 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 609364 614115 - CmoCh05G001400.1 Cmo05g00140 382275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00140 770 Gene3D Tetratricopeptide repeat domain 612 768 IPR011990 GO:0005515
Cmo05g00140 770 Gene3D Tetratricopeptide repeat domain 94 597 IPR011990 GO:0005515
Cmo05g00140 770 Coils Coil 110 130 - -
Cmo05g00140 770 PANTHER PROTEIN NPG1 55 769 IPR043376 -
Cmo05g00140 770 SMART tpr_5 372 405 IPR019734 GO:0005515
Cmo05g00140 770 SMART tpr_5 731 764 IPR019734 GO:0005515
Cmo05g00140 770 SMART tpr_5 661 694 IPR019734 GO:0005515
Cmo05g00140 770 SMART tpr_5 566 599 IPR019734 GO:0005515
Cmo05g00140 770 SMART tpr_5 627 660 IPR019734 GO:0005515
Cmo05g00140 770 PANTHER PROTEIN NPGR1 55 769 - -
Cmo05g00140 770 SUPERFAMILY TPR-like 565 742 IPR011990 GO:0005515
Cmo05g00140 770 SUPERFAMILY TPR-like 362 601 IPR011990 GO:0005515
Cmo05g00140 770 Coils Coil 539 559 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00140 Cmo-Chr5:609364 Cmo19g00117 Cmo-Chr19:686724 0 dispersed
Cmo05g00140 Cmo-Chr5:609364 Cmo14g01869 Cmo-Chr14:14051061 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00140 K21843 - csv:101209448 1290.79