Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00143 ATGGCAGCTCATATGCGCATGTTCTTCTGGGTTTCTTTGATGGTCATCTTTTTGGCGCGCTCCACCTTGACACAAACTGATAACTACATCGTCCATATGGACTTAGCCGCCATGCCTAAACCCTTTGCTACCCACCATAGCTGGTACTCTGCCACCCTTTCCTCTGTTCTTCTAGATACCTCTCCTCTTCGGACAACAACTTCTTCTTCTTCCTCCTCTTTGCCTTCCAAATTGATCCATTGTTACAAGCACGCCATCAATGGATTCACTGCAAGTCTCACCCCATCCCAGCTTGACGCTTTGAAAAACTCTCCTGGCTATGTTTCATCTTTACGAGATTCATCGGTTCGTGCTGACACAACTCACTCCTCTAACTTCCTCGCTCTAAGCCCCAACTCGGGTCTCTTGCCGATCTCGAATTATGGCAGTGATGTTATAATCGGGTTTGTGGATACTGGAGTTTGGCCTGAAAGCGAGAGCTTTAATGACGATGGGATCTCTAAAATTCCATCTAGATGGAAAGGAGAATGCGAGAGTGGCACCCATTTCAATGCTTCATTGTGCAACAAGAAGCTGATTGGAGGTAGTTACGTTAAAGAGGCATCCTTTTTCGGTTATGGTCAGGGAACTGCAAGAGGCGTGGCTCCACGAGCACGAGTGGCAATATACAAGGCCATATGGAAAGAGGGTAATGCTGTATCAGATGTAATAGCTGCAATTGATCAGGCAATTTCAGACGGTGTCGATGTGATATCACTGTCGCTCGGCCTCGACGGAGTTCCTCTGTACGAAGACCCTGTTGCCATAGCCACCTTCGCCGCCATGGAAAGAGGTATTTTTGTAGCCACATCCGCTGGAAATAAGGGGCCTCAGTTTGGGACAGTACATAGTGGAGCTCCTTGGGTTTTAAATGTTGCAGCAGGCACAATGGACCGTGACTTTGGAGGTACAATTACACTTACCAATGGAGTTTCTGTTTTGGGATCATCTTTATTTCCTTTGAACTCAGCCATAGCTTTGTCTCCACTCCCCATTGTGTTCATGGGGCAATGTCACAATTTGAAGAAACTCAAAAGAGTTGGATTTAAGATTGTGGTATGTGAAGATAGTGATGAGTACTCCTTAGATTTACAAGTTGATAATGTTGAAAGTGCCAAAATTGCCGTAGGAGTCTTCATCTCCAATATCTCCGATTGGGATAACTTAATCCAAACTTCATTCCCTTCTATTTTCCTCAACGCATATCATGGAAATGTCATAAAAGATTACATCAAGAGAAGCTCTAACCCAAAAGCAAGGGTGAATTTCCACAAGACAATAATAGGGACAAAGCCCGCACCGAGTGTGGCGCGTTACAGCTCAAGAGGGCCATCAGAGAGCTGCCCCTTTGTGTTGAAGCCTGACATTATGGCGCCTGGTGATGCCATTTTAGCTTCATGGCCACAGAACGTGGCAGCCACAGATGTGTACTCAAGGCCAATTTACAGCAAGTTTAATGTATTGTCAGGGACTTCTATGGCTTGCCCACATGCCGCAGGAGTTGCAGCCCTTCTCAAGGGTGCACACCCTGGGTGGAGCCCCGCAGCAATTCGGTCGGCAATGATGACCACGGCCGATATTGTCGACAATACACAAACATTGATCAAAGACCTTGGCAACAAGAACAAAGTAGCTACTCCTTTAGCCATGGGGTCCGGGCATGTCAATCCCAACAAAGCGATTGACCCGGGTTTGATTTATGACATGGGAATCGAAGACTATACAAACCTTCTCTGTGCATTAAACTACACCAAAAACCAAATCCAAACAATCACTCGATCGACCTCAAACCATTGCGAGAAGGCGTTGTTAGACTTGAACTACCCTTCTTTTATCATGACTGTGAATGCTAGTGATTCACAGACAGGAAGAACAGAAATGTCAAGAGAATTTAAGAGGAGGGTCACCAATATAGGAGAGAAAGGAGCAACGTACAGAGCAAAGATGACACCCATGAAGGGGCTTGTAGTGACAGTGGAACCGAACAAGCTGAAATTCAAGAGGAAGAATCAAAATTTGAGTTTTAAGCTGAAAATTAGAGGCCATGTTAGCATTAAAAGAGAAAGTGACGTGGTTTTTGGTTATCTGAATTGGGTGGAGGTCGGAGGTGGACATAGAGTTCAAAGTCCCATAGTGGTGGCCGTGGTGGCCGGCCTGAGCCCTCTGAGACCTCCGAGTTCCAGACTCGCCCATAACTCAGCCATCCAGTCTCCTCTTTCTCTTGGCTCGAACAACTCAAACCGCCAACTCTCCATCATCATTATTCCTTATTGGATATTGGAATTTCAGGATTTCTTCCTATTTCTTTCTCTTTTTGAGTTTCTTTTTAATTTCCGGTTCATATCTTGCCCTGGGTATCTTCTTTTCCTTTTATGTGTTGAGACAGGCAGGGGGTTTTGTTCAATTCTGGAGATGGGGACGGAGAATCCCGTCAATTTTTCTTACATGGGGCGGAGCTTTGATGATCTCACCAACGGCGATAGTTCTGGGGCTTTTAGCGACTGTAACAGCGATAGATCCGGGGAGTTCCCGATGGCGTCGTCCCAGAGTCGCCGCCTTTTGATTTCTTGTGCTTCTGATAACTCCGACGAGCTAATTCAGCAGCTGGTATTGGACCTCGAGTCCTGTTCGATTGACGAGCAGAAACAGGCGGCCATGGAGATCAGACTCCTCGCCAAGAACAAACCCGAGAATCGATTAAGGATCGCGAAAGCCGGTGCAGTGAGGCCGTTGATTTCGCTGATATCGTGTACGGATCCTCAGCTTCAAGAGTACGGCGTGACGGCGATTTTGAATCTGTCGCTGAACGACGAGAACAAGGAGCTGATAGCGGCGTCTGGTGCGATTAAGCCTCTGGTTAGAGCTCTCATGTCCGGAACTTCAACGGCGAAGGAGAACGCCGCTTGTGCTTTACTGCGGCTTTCGCAAATGGAAGAGAACAAGATAGCAATCGGACGGTCAGGAGCGATTCCACTTCTGGTGAATCTATTGGGCAACGGTGGCTTTCGCGGAAAGAAGGATGCATCGACGGCTCTGTATTCGCTGTGCTCGGTTAAGGAGAACAAAATCAGAGCGGTGAAAGCGGGAATCATGAGGCCGCTAGTGGAATTGATGGCCGATTTCGGGTCAAACATGGTGGACAAGTCAGCGTTCGTGTTGAGCGTGTTGGTATCGATGTCGGAGGCAAGAACGGCTCTGGTAGACGAGGGCGGAATCCCAGTACTGGTGGAATTAGTGGAGGACGGAACGCAGCGGCAGAAGGAGATCGCGGCGGTGATTTTGCTGCAGATTTGCGAGGAAAGTGTCCTTTACCGTACAATGGTAGCTCGTGAAGGAGCAATTCCACCGCTAGTCGCCTTGTCACAGTCTGGCACGAATCGCGCCAAGCAAAAGGTACGGATTCCCGGCCGAAACCTCCGCGGAGAAACTGATAGAGCTGCTACGGCAACCGAGATCCGGCAACTACGCTGCCACCACCTCAAATGTGTGTGTCTAATTTTTGTTCCAGCCACGTGGACGATGCAACCCCCCACACAACAAGACATCTCAATTACCCCCAACACACAAAAACCAAAAACCAAAAAAAGAAAGGGAAAGAGATGA 3642 47.78 MAAHMRMFFWVSLMVIFLARSTLTQTDNYIVHMDLAAMPKPFATHHSWYSATLSSVLLDTSPLRTTTSSSSSSLPSKLIHCYKHAINGFTASLTPSQLDALKNSPGYVSSLRDSSVRADTTHSSNFLALSPNSGLLPISNYGSDVIIGFVDTGVWPESESFNDDGISKIPSRWKGECESGTHFNASLCNKKLIGGSYVKEASFFGYGQGTARGVAPRARVAIYKAIWKEGNAVSDVIAAIDQAISDGVDVISLSLGLDGVPLYEDPVAIATFAAMERGIFVATSAGNKGPQFGTVHSGAPWVLNVAAGTMDRDFGGTITLTNGVSVLGSSLFPLNSAIALSPLPIVFMGQCHNLKKLKRVGFKIVVCEDSDEYSLDLQVDNVESAKIAVGVFISNISDWDNLIQTSFPSIFLNAYHGNVIKDYIKRSSNPKARVNFHKTIIGTKPAPSVARYSSRGPSESCPFVLKPDIMAPGDAILASWPQNVAATDVYSRPIYSKFNVLSGTSMACPHAAGVAALLKGAHPGWSPAAIRSAMMTTADIVDNTQTLIKDLGNKNKVATPLAMGSGHVNPNKAIDPGLIYDMGIEDYTNLLCALNYTKNQIQTITRSTSNHCEKALLDLNYPSFIMTVNASDSQTGRTEMSREFKRRVTNIGEKGATYRAKMTPMKGLVVTVEPNKLKFKRKNQNLSFKLKIRGHVSIKRESDVVFGYLNWVEVGGGHRVQSPIVVAVVAGLSPLRPPSSRLAHNSAIQSPLSLGSNNSNRQLSIIIIPYWILEFQDFFLFLSLFEFLFNFRFISCPGYLLFLLCVETGRGFCSILEMGTENPVNFSYMGRSFDDLTNGDSSGAFSDCNSDRSGEFPMASSQSRRLLISCASDNSDELIQQLVLDLESCSIDEQKQAAMEIRLLAKNKPENRLRIAKAGAVRPLISLISCTDPQLQEYGVTAILNLSLNDENKELIAASGAIKPLVRALMSGTSTAKENAACALLRLSQMEENKIAIGRSGAIPLLVNLLGNGGFRGKKDASTALYSLCSVKENKIRAVKAGIMRPLVELMADFGSNMVDKSAFVLSVLVSMSEARTALVDEGGIPVLVELVEDGTQRQKEIAAVILLQICEESVLYRTMVAREGAIPPLVALSQSGTNRAKQKVRIPGRNLRGETDRAATATEIRQLRCHHLKCVCLIFVPATWTMQPPTQQDISITPNTQKPKTKKRKGKR 1213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 626314 633741 + CmoCh05G001430.1 Cmo05g00143 382278

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00143 1213 ProSiteProfiles Serine proteases, subtilase domain profile. 123 574 - -
Cmo05g00143 1213 Gene3D Peptidase S8/S53 domain 197 587 IPR036852 GO:0004252|GO:0006508
Cmo05g00143 1213 SUPERFAMILY Subtilisin-like 120 578 IPR036852 GO:0004252|GO:0006508
Cmo05g00143 1213 Pfam Fibronectin type-III domain 618 726 IPR041469 -
Cmo05g00143 1213 Gene3D - 1016 1152 IPR011989 -
Cmo05g00143 1213 Gene3D - 857 1015 IPR011989 -
Cmo05g00143 1213 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 17 118 IPR037045 -
Cmo05g00143 1213 Pfam Armadillo/beta-catenin-like repeat 949 988 IPR000225 GO:0005515
Cmo05g00143 1213 Pfam Armadillo/beta-catenin-like repeat 991 1030 IPR000225 GO:0005515
Cmo05g00143 1213 Pfam Armadillo/beta-catenin-like repeat 909 947 IPR000225 GO:0005515
Cmo05g00143 1213 Gene3D - 591 729 - -
Cmo05g00143 1213 Pfam Subtilase family 142 545 IPR000209 GO:0006508|GO:0008236
Cmo05g00143 1213 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 919 961 IPR000225 GO:0005515
Cmo05g00143 1213 CDD Peptidases_S8_3 119 539 IPR034197 -
Cmo05g00143 1213 CDD PA_subtilisin_like 317 434 - -
Cmo05g00143 1213 Gene3D - 311 441 - -
Cmo05g00143 1213 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 18 195 IPR045051 -
Cmo05g00143 1213 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 195 730 IPR045051 -
Cmo05g00143 1213 SMART arm_5 949 989 IPR000225 GO:0005515
Cmo05g00143 1213 SMART arm_5 1031 1071 IPR000225 GO:0005515
Cmo05g00143 1213 SMART arm_5 908 948 IPR000225 GO:0005515
Cmo05g00143 1213 SMART arm_5 1072 1112 IPR000225 GO:0005515
Cmo05g00143 1213 SMART arm_5 990 1030 IPR000225 GO:0005515
Cmo05g00143 1213 Gene3D Peptidase S8/S53 domain 144 196 IPR036852 GO:0004252|GO:0006508
Cmo05g00143 1213 SUPERFAMILY ARM repeat 876 1143 IPR016024 -
Cmo05g00143 1213 MobiDBLite consensus disorder prediction 1190 1213 - -
Cmo05g00143 1213 ProSitePatterns Serine proteases, subtilase family, serine active site. 503 513 IPR023828 -
Cmo05g00143 1213 Pfam Peptidase inhibitor I9 29 118 IPR010259 -
Cmo05g00143 1213 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 960 1002 IPR000225 GO:0005515
Cmo05g00143 1213 PRINTS Subtilisin serine protease family (S8) signature 502 518 IPR015500 -
Cmo05g00143 1213 PRINTS Subtilisin serine protease family (S8) signature 142 161 IPR015500 -
Cmo05g00143 1213 PANTHER PUTATIVE-RELATED 18 195 - -
Cmo05g00143 1213 PANTHER PUTATIVE-RELATED 195 730 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00143 - - - cpep:111805454 1368.21
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00143 Cmo12g00537 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00143 Cmo-Chr5:626314 Cmo17g00660 Cmo-Chr17:6842754 3.77E-156 dispersed
Cmo12g00537 Cmo-Chr12:3273369 Cmo05g00143 Cmo-Chr5:626314 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g651 . . . . . . . . Cmo05g00143 Cmo12g00537 . . . Car12g00540 Sed10g1203 . Cpe07g00515 Bhi04g00413 Tan02g1737 Cmetu03g0693 . Hepe08g1331 . Lcy13g2131 Cla08g01619 Cam08g2121 Cec08g1706 Cco08g1830 Clacu08g1806 . Cre08g1588 . . Cone17ag0886 Cone20ag0233 . . . Cme03g02100 . . . . . . . . . . . Cma12g00597 Cma05g00141 Car05g00123 . Cpe11g00122 . . . . . . . . . . . . . . . Lsi08g01525 Csa02g01897 Chy03g01589 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012008 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 3 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00143 Cmo_Chr05 FPKM 1.963311 1.802474 0.0 0.0 0.0 0.0 0.324527 0.0 0.0 0.0