Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00146 ATGGAGGCTTTGGGAGGTTTTTCTGATGGGGAATGGGAGTCTTTCGCCGCCATGTTCTCATCGGAGGAGGTAGATCAGTCCCATATTCCGATCGCGAATCATTCCAGTCCTTCCACTGAGCTTCAATTGCCCAACAATGGCGGCAGCAGCTGGTTCTATTCATTGGACGCTTTTGTTCCCAATTTGCAGAGTTATTGCGTCAAACAGGACACGAGGAGCTGCAGTAGCTGCATTACTACTGATAATTCCCATGCTGCCTTTTTGTTTCCCAACTCTACTGATTTCTTTACGCCAATTGACGAGGGGAATCTTGGGTCCTCGTGTTTTTCTGATGTTTTAATCGAGGAAGTGGATAAGGCTCTCGACACCGCCGCCGCCGGTGAAGACTCTAGCACTGAGAGATTCGTCGAGATTAATGTAGTACAAGGTAACTACCCAGCACTGCCGCCGCCATCGCAGCTCGTAGATTCCACTGGTGCCGCGAAGGAACCAATGGCACTGAAAAGGAAAGTCAATAACGAAGATATTTCTGATAATCAGAACAAGAAAACTCGGGTTTCAGCAGATGGGCAGAAGAAGAAGAAAACAGAGGAAAGAAAGAAAAATGAGAAGAGAAAAGGGAAGAGTGTGGAAGAAGAAGGCAATGCGGGTGGAGCATCAGAAGGGCAGTGCTCCATTAGTTACAGTTCCGATCAGGAAGAAAATGGTTCACAGGAGGGCCAAGGCGCCACCTCCGACGGCGGCTTGACCAGGAAGGGCAGAGCAAGCAGAGGGTCGGCCACAGATCCCCAAAGCCTCTACGCTAGAAAACGAAGGGAGAGAATCAACGAGCGACTAAGAATGTTACAGAAACTTGTTCCCAATGGAACCAAGGTTGATATCAGTACCATGCTTGAAGAAGCTGTTCATTACGTCAAGTTTTTGCAGCTCCAAATCAAGTTATTGAGCTCAGATGAGCTGTGGATGTTTGCTCCTTTGGCATACAATGGATTGGACCTTGGGCTTCACCAGAAGCTCTCTCCATTTGGATCACCTTGA 1038 48.17 MEALGGFSDGEWESFAAMFSSEEVDQSHIPIANHSSPSTELQLPNNGGSSWFYSLDAFVPNLQSYCVKQDTRSCSSCITTDNSHAAFLFPNSTDFFTPIDEGNLGSSCFSDVLIEEVDKALDTAAAGEDSSTERFVEINVVQGNYPALPPPSQLVDSTGAAKEPMALKRKVNNEDISDNQNKKTRVSADGQKKKKTEERKKNEKRKGKSVEEEGNAGGASEGQCSISYSSDQEENGSQEGQGATSDGGLTRKGRASRGSATDPQSLYARKRRERINERLRMLQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDELWMFAPLAYNGLDLGLHQKLSPFGSP 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 642861 644240 - CmoCh05G001460.1 Cmo05g00146 382281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00146 345 MobiDBLite consensus disorder prediction 168 212 - -
Cmo05g00146 345 CDD bHLH_AtIND_like 260 322 - -
Cmo05g00146 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 259 320 IPR036638 GO:0046983
Cmo05g00146 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 259 308 IPR011598 GO:0046983
Cmo05g00146 345 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 5 342 - -
Cmo05g00146 345 Gene3D - 261 322 IPR036638 GO:0046983
Cmo05g00146 345 MobiDBLite consensus disorder prediction 220 245 - -
Cmo05g00146 345 Coils Coil 193 213 - -
Cmo05g00146 345 MobiDBLite consensus disorder prediction 168 272 - -
Cmo05g00146 345 PANTHER TRANSCRIPTION FACTOR BHLH84-LIKE 5 342 - -
Cmo05g00146 345 Pfam Helix-loop-helix DNA-binding domain 269 309 IPR011598 GO:0046983
Cmo05g00146 345 SMART finulus 265 314 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00146 Cmo-Chr5:642861 Cmo12g00535 Cmo-Chr12:3266754 7.09E-36 dispersed
Cmo11g01920 Cmo-Chr11:13316642 Cmo05g00146 Cmo-Chr5:642861 4.97E-12 dispersed
Cmo11g01419 Cmo-Chr11:9982115 Cmo05g00146 Cmo-Chr5:642861 6.04E-52 wgd
Cmo04g00483 Cmo-Chr4:2409281 Cmo05g00146 Cmo-Chr5:642861 4.04E-52 wgd
Cmo05g00146 Cmo-Chr5:642861 Cmo09g00277 Cmo-Chr9:1225906 2.52E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9780 PF00010 HLH 1.60E-08 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00146 - - cmax:111491997 638.647