Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo05g00146 | ATGGAGGCTTTGGGAGGTTTTTCTGATGGGGAATGGGAGTCTTTCGCCGCCATGTTCTCATCGGAGGAGGTAGATCAGTCCCATATTCCGATCGCGAATCATTCCAGTCCTTCCACTGAGCTTCAATTGCCCAACAATGGCGGCAGCAGCTGGTTCTATTCATTGGACGCTTTTGTTCCCAATTTGCAGAGTTATTGCGTCAAACAGGACACGAGGAGCTGCAGTAGCTGCATTACTACTGATAATTCCCATGCTGCCTTTTTGTTTCCCAACTCTACTGATTTCTTTACGCCAATTGACGAGGGGAATCTTGGGTCCTCGTGTTTTTCTGATGTTTTAATCGAGGAAGTGGATAAGGCTCTCGACACCGCCGCCGCCGGTGAAGACTCTAGCACTGAGAGATTCGTCGAGATTAATGTAGTACAAGGTAACTACCCAGCACTGCCGCCGCCATCGCAGCTCGTAGATTCCACTGGTGCCGCGAAGGAACCAATGGCACTGAAAAGGAAAGTCAATAACGAAGATATTTCTGATAATCAGAACAAGAAAACTCGGGTTTCAGCAGATGGGCAGAAGAAGAAGAAAACAGAGGAAAGAAAGAAAAATGAGAAGAGAAAAGGGAAGAGTGTGGAAGAAGAAGGCAATGCGGGTGGAGCATCAGAAGGGCAGTGCTCCATTAGTTACAGTTCCGATCAGGAAGAAAATGGTTCACAGGAGGGCCAAGGCGCCACCTCCGACGGCGGCTTGACCAGGAAGGGCAGAGCAAGCAGAGGGTCGGCCACAGATCCCCAAAGCCTCTACGCTAGAAAACGAAGGGAGAGAATCAACGAGCGACTAAGAATGTTACAGAAACTTGTTCCCAATGGAACCAAGGTTGATATCAGTACCATGCTTGAAGAAGCTGTTCATTACGTCAAGTTTTTGCAGCTCCAAATCAAGTTATTGAGCTCAGATGAGCTGTGGATGTTTGCTCCTTTGGCATACAATGGATTGGACCTTGGGCTTCACCAGAAGCTCTCTCCATTTGGATCACCTTGA | 1038 | 48.17 | MEALGGFSDGEWESFAAMFSSEEVDQSHIPIANHSSPSTELQLPNNGGSSWFYSLDAFVPNLQSYCVKQDTRSCSSCITTDNSHAAFLFPNSTDFFTPIDEGNLGSSCFSDVLIEEVDKALDTAAAGEDSSTERFVEINVVQGNYPALPPPSQLVDSTGAAKEPMALKRKVNNEDISDNQNKKTRVSADGQKKKKTEERKKNEKRKGKSVEEEGNAGGASEGQCSISYSSDQEENGSQEGQGATSDGGLTRKGRASRGSATDPQSLYARKRRERINERLRMLQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDELWMFAPLAYNGLDLGLHQKLSPFGSP | 345 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 642861 | 644240 | - | CmoCh05G001460.1 | Cmo05g00146 | 382281 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo05g00146 | 345 | MobiDBLite | consensus disorder prediction | 168 | 212 | - | - | |
Cmo05g00146 | 345 | CDD | bHLH_AtIND_like | 260 | 322 | - | - | |
Cmo05g00146 | 345 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 259 | 320 | IPR036638 | GO:0046983 | |
Cmo05g00146 | 345 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 259 | 308 | IPR011598 | GO:0046983 | |
Cmo05g00146 | 345 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 5 | 342 | - | - | |
Cmo05g00146 | 345 | Gene3D | - | 261 | 322 | IPR036638 | GO:0046983 | |
Cmo05g00146 | 345 | MobiDBLite | consensus disorder prediction | 220 | 245 | - | - | |
Cmo05g00146 | 345 | Coils | Coil | 193 | 213 | - | - | |
Cmo05g00146 | 345 | MobiDBLite | consensus disorder prediction | 168 | 272 | - | - | |
Cmo05g00146 | 345 | PANTHER | TRANSCRIPTION FACTOR BHLH84-LIKE | 5 | 342 | - | - | |
Cmo05g00146 | 345 | Pfam | Helix-loop-helix DNA-binding domain | 269 | 309 | IPR011598 | GO:0046983 | |
Cmo05g00146 | 345 | SMART | finulus | 265 | 314 | IPR011598 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g00146 | Cmo-Chr5:642861 | Cmo12g00535 | Cmo-Chr12:3266754 | 7.09E-36 | dispersed | |
Cmo11g01920 | Cmo-Chr11:13316642 | Cmo05g00146 | Cmo-Chr5:642861 | 4.97E-12 | dispersed | |
Cmo11g01419 | Cmo-Chr11:9982115 | Cmo05g00146 | Cmo-Chr5:642861 | 6.04E-52 | wgd | |
Cmo04g00483 | Cmo-Chr4:2409281 | Cmo05g00146 | Cmo-Chr5:642861 | 4.04E-52 | wgd | |
Cmo05g00146 | Cmo-Chr5:642861 | Cmo09g00277 | Cmo-Chr9:1225906 | 2.52E-41 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9780 | PF00010 | HLH | 1.60E-08 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo05g00146 | - | - | cmax:111491997 | 638.647 |