Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo05g00159 | ATGGCCGAGTTTGGGAGCTGTGTCCGTATCACTCGTGCTTCCTCAAAGAGAGTTGCGGCATCCGCCATGTCCGATGACCAATCCACCAATAAAAAGCGGGTGGTTCTCGGTGAGCTTCCCAACATTCAGAATGCTACTGGATCAGCGGCACAGAAGAGGAAGGCCACGTCCCAGATCACAAAATGCAAGCCTAAGAAGAGAACTAAGATCGCTGCTGCTCCAATGATCAAGACGACTGTCGTTGTGGAAGATAATGATCCCAAGTTGACCGTTGATGATATTTTGGACGACCCAGAAATGAAGGGGCCTTATTCCTCCGATATTTATGCTTATCTTCGCAAAATGGAGGCGGAACCAATAAGAAGGCCGATACCAAATTACTTAGAGAAGATTCAGACGGACATAAGTGCTAATATGAGAGGGGTTTTGGTTGATTGGATGGTTGAGGTTGCCGAGGAGTACAAGCTCGGCTCCGATACTCTGTATCTATCCATCTCTTACATTGACAGGTTCCTATCAATGAACATAATCAATAGGCAAAGACTTCAATTGCTGGGGGTTTCTTCAATGCTCATTGCATCGAAATATGAAGAGATCACCCCTCCACATGTGGAAGATTTCTGCTACATAACAGATAATACTTACAGAAGGGATGAGGTTGTGAAGATGGAGGCTGATATACTCAAATCTTTGAACTTTGAAATGGGAAATCCTACTGCCAAGACATTCTTAAGGCAAATACCCAATCTGCATTTGGAATTTCTGGGTCATTACCTTGCTGAGCTAAGCTTATTGGACTATAACTTTGTAAAGTTCTTGCCTTCTTTGATTGCTGCTTCAGTTGTATTTCTTGCAAAATTCATCATCCGGCCGAAGCAGCATCCTTGGGGTCCGAACTTGCAACAATACACAGGCTACAGGCCAGCTGATCTAAGGCCATGTGTGCTTCTATTACACGATTTGTACATGGCAAGAAGAGGGGGATCTCTGATAGCTGTGAGAGAAAAATACAAGCAACAAAGGTTCAAGAGTGTGGCAATGATGCCTTCACCCCCTGAGATACCGTTTGCCTATTTCGAAGAAGCTTAA | 1089 | 44.35 | MAEFGSCVRITRASSKRVAASAMSDDQSTNKKRVVLGELPNIQNATGSAAQKRKATSQITKCKPKKRTKIAAAPMIKTTVVVEDNDPKLTVDDILDDPEMKGPYSSDIYAYLRKMEAEPIRRPIPNYLEKIQTDISANMRGVLVDWMVEVAEEYKLGSDTLYLSISYIDRFLSMNIINRQRLQLLGVSSMLIASKYEEITPPHVEDFCYITDNTYRRDEVVKMEADILKSLNFEMGNPTAKTFLRQIPNLHLEFLGHYLAELSLLDYNFVKFLPSLIAASVVFLAKFIIRPKQHPWGPNLQQYTGYRPADLRPCVLLLHDLYMARRGGSLIAVREKYKQQRFKSVAMMPSPPEIPFAYFEEA | 362 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 686871 | 689130 | + | CmoCh05G001590.1 | Cmo05g00159 | 382294 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo05g00159 | 362 | CDD | CYCLIN | 139 | 228 | IPR013763 | - | |
Cmo05g00159 | 362 | PANTHER | CYCLINS | 24 | 361 | IPR039361 | - | |
Cmo05g00159 | 362 | SMART | cyclin_7 | 242 | 320 | IPR013763 | - | |
Cmo05g00159 | 362 | SMART | cyclin_7 | 145 | 229 | IPR013763 | - | |
Cmo05g00159 | 362 | CDD | CYCLIN | 238 | 319 | IPR013763 | - | |
Cmo05g00159 | 362 | Gene3D | - | 123 | 236 | - | - | |
Cmo05g00159 | 362 | SUPERFAMILY | Cyclin-like | 238 | 353 | IPR036915 | - | |
Cmo05g00159 | 362 | PIRSF | Cyclin_A_B_D_E | 9 | 355 | IPR039361 | - | |
Cmo05g00159 | 362 | SUPERFAMILY | Cyclin-like | 96 | 235 | IPR036915 | - | |
Cmo05g00159 | 362 | ProSitePatterns | Cyclins signature. | 140 | 171 | IPR006671 | - | |
Cmo05g00159 | 362 | SMART | Cyclin_C_2 | 238 | 351 | IPR004367 | - | |
Cmo05g00159 | 362 | Gene3D | - | 107 | 347 | - | - | |
Cmo05g00159 | 362 | PANTHER | CYCLIN-A3-1-RELATED | 24 | 361 | - | - | |
Cmo05g00159 | 362 | Pfam | Cyclin, N-terminal domain | 107 | 235 | IPR006671 | - | |
Cmo05g00159 | 362 | Pfam | Cyclin, C-terminal domain | 239 | 351 | IPR004367 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo05g00159 | Cmo09g00266 | CCT | |
Cmo01g01859 | Cmo05g00159 | CCT | |
Cmo05g00159 | Cmo09g00266 | ECH | |
Cmo01g01859 | Cmo05g00159 | ECH | |
Cmo05g00159 | Cmo12g00518 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g01859 | Cmo-Chr1:13520996 | Cmo05g00159 | Cmo-Chr5:686871 | 6.93E-162 | dispersed | |
Cmo05g00159 | Cmo-Chr5:686871 | Cmo15g00668 | Cmo-Chr15:3266992 | 1.43E-99 | dispersed | |
Cmo11g01399 | Cmo-Chr11:9837969 | Cmo05g00159 | Cmo-Chr5:686871 | 6.91E-89 | wgd | |
Cmo12g00518 | Cmo-Chr12:3185191 | Cmo05g00159 | Cmo-Chr5:686871 | 0 | wgd | |
Cmo05g00159 | Cmo-Chr5:686871 | Cmo09g00266 | Cmo-Chr9:1172689 | 3.62E-159 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo05g00159 | K06627 | - | csv:101206145 | 621.698 |