Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00159 ATGGCCGAGTTTGGGAGCTGTGTCCGTATCACTCGTGCTTCCTCAAAGAGAGTTGCGGCATCCGCCATGTCCGATGACCAATCCACCAATAAAAAGCGGGTGGTTCTCGGTGAGCTTCCCAACATTCAGAATGCTACTGGATCAGCGGCACAGAAGAGGAAGGCCACGTCCCAGATCACAAAATGCAAGCCTAAGAAGAGAACTAAGATCGCTGCTGCTCCAATGATCAAGACGACTGTCGTTGTGGAAGATAATGATCCCAAGTTGACCGTTGATGATATTTTGGACGACCCAGAAATGAAGGGGCCTTATTCCTCCGATATTTATGCTTATCTTCGCAAAATGGAGGCGGAACCAATAAGAAGGCCGATACCAAATTACTTAGAGAAGATTCAGACGGACATAAGTGCTAATATGAGAGGGGTTTTGGTTGATTGGATGGTTGAGGTTGCCGAGGAGTACAAGCTCGGCTCCGATACTCTGTATCTATCCATCTCTTACATTGACAGGTTCCTATCAATGAACATAATCAATAGGCAAAGACTTCAATTGCTGGGGGTTTCTTCAATGCTCATTGCATCGAAATATGAAGAGATCACCCCTCCACATGTGGAAGATTTCTGCTACATAACAGATAATACTTACAGAAGGGATGAGGTTGTGAAGATGGAGGCTGATATACTCAAATCTTTGAACTTTGAAATGGGAAATCCTACTGCCAAGACATTCTTAAGGCAAATACCCAATCTGCATTTGGAATTTCTGGGTCATTACCTTGCTGAGCTAAGCTTATTGGACTATAACTTTGTAAAGTTCTTGCCTTCTTTGATTGCTGCTTCAGTTGTATTTCTTGCAAAATTCATCATCCGGCCGAAGCAGCATCCTTGGGGTCCGAACTTGCAACAATACACAGGCTACAGGCCAGCTGATCTAAGGCCATGTGTGCTTCTATTACACGATTTGTACATGGCAAGAAGAGGGGGATCTCTGATAGCTGTGAGAGAAAAATACAAGCAACAAAGGTTCAAGAGTGTGGCAATGATGCCTTCACCCCCTGAGATACCGTTTGCCTATTTCGAAGAAGCTTAA 1089 44.35 MAEFGSCVRITRASSKRVAASAMSDDQSTNKKRVVLGELPNIQNATGSAAQKRKATSQITKCKPKKRTKIAAAPMIKTTVVVEDNDPKLTVDDILDDPEMKGPYSSDIYAYLRKMEAEPIRRPIPNYLEKIQTDISANMRGVLVDWMVEVAEEYKLGSDTLYLSISYIDRFLSMNIINRQRLQLLGVSSMLIASKYEEITPPHVEDFCYITDNTYRRDEVVKMEADILKSLNFEMGNPTAKTFLRQIPNLHLEFLGHYLAELSLLDYNFVKFLPSLIAASVVFLAKFIIRPKQHPWGPNLQQYTGYRPADLRPCVLLLHDLYMARRGGSLIAVREKYKQQRFKSVAMMPSPPEIPFAYFEEA 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 686871 689130 + CmoCh05G001590.1 Cmo05g00159 382294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00159 362 CDD CYCLIN 139 228 IPR013763 -
Cmo05g00159 362 PANTHER CYCLINS 24 361 IPR039361 -
Cmo05g00159 362 SMART cyclin_7 242 320 IPR013763 -
Cmo05g00159 362 SMART cyclin_7 145 229 IPR013763 -
Cmo05g00159 362 CDD CYCLIN 238 319 IPR013763 -
Cmo05g00159 362 Gene3D - 123 236 - -
Cmo05g00159 362 SUPERFAMILY Cyclin-like 238 353 IPR036915 -
Cmo05g00159 362 PIRSF Cyclin_A_B_D_E 9 355 IPR039361 -
Cmo05g00159 362 SUPERFAMILY Cyclin-like 96 235 IPR036915 -
Cmo05g00159 362 ProSitePatterns Cyclins signature. 140 171 IPR006671 -
Cmo05g00159 362 SMART Cyclin_C_2 238 351 IPR004367 -
Cmo05g00159 362 Gene3D - 107 347 - -
Cmo05g00159 362 PANTHER CYCLIN-A3-1-RELATED 24 361 - -
Cmo05g00159 362 Pfam Cyclin, N-terminal domain 107 235 IPR006671 -
Cmo05g00159 362 Pfam Cyclin, C-terminal domain 239 351 IPR004367 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00159 Cmo09g00266 CCT
Cmo01g01859 Cmo05g00159 CCT
Cmo05g00159 Cmo09g00266 ECH
Cmo01g01859 Cmo05g00159 ECH
Cmo05g00159 Cmo12g00518 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01859 Cmo-Chr1:13520996 Cmo05g00159 Cmo-Chr5:686871 6.93E-162 dispersed
Cmo05g00159 Cmo-Chr5:686871 Cmo15g00668 Cmo-Chr15:3266992 1.43E-99 dispersed
Cmo11g01399 Cmo-Chr11:9837969 Cmo05g00159 Cmo-Chr5:686871 6.91E-89 wgd
Cmo12g00518 Cmo-Chr12:3185191 Cmo05g00159 Cmo-Chr5:686871 0 wgd
Cmo05g00159 Cmo-Chr5:686871 Cmo09g00266 Cmo-Chr9:1172689 3.62E-159 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00159 K06627 - csv:101206145 621.698