Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00163 ATGGTACCACCGTATGCGCTTGATGCTCTTTATTGCTCTGAGGAGCACTGGGAGGAGGACGACAACGAGGAAAGGGGTTTTGACCACCAACCTTACTCTACTTTAACAACCGATTCAACTTCTCCGATTTTGGCTGAGCAGGATCTGTTTTGGGATGACCATGAACTAATTTCTCTGCTTTCAAAAGAGAGGCCTAATGAACTGTTTAAAAGCATTCAGATTGACCCTTCTCTTGCTGCCGCCCGACGACGTGCCGTCGACTGGATGCTGAAGATCAGTGCCCATTACTCCTTCTCTGCTCTCACTGCGGTTCTCGCCGTCGATTACTTCGACCGGTTTCTGTCCTGTTTTCATTTTCAAACAGACAAGCCGTGGATGTCTCAGCTTGCTGCTGTTGCCTGTATCTCTCTTGCTGCCAAAGTGGAGGAGACCCAAGTCCCTCTTTTATTGGACCTACAAGTGGAAGACAGTAGATATCTGTTTGAAACCAAGACCATCAAGAAGATGGAGCTTCTTGTGCTCTCTACGCTTGAATGGCGAATGAATCCTGTCACCCCATTTTCATTTGTGGATTATATCTCAAGGAGACTGGGATTCAAGGACCATATCTGCAGGGAAATCCTTAGGCAGTGTGAACGAACTGTTCTCTCGGTTATCCTAGACTCAGATTTCATGTCGTTTCTTCCTTCTGTAATGGCCACCGCCACAATGCTGCACGCTTTTAAAGCTATGGAGCCCCACTTCGGCGTCGAATACGATTCCCAGCTTCTTACCATCCTCGGAATCGAGAAGGGCAATGTGGAAGAATGCTGTAAGCTGATCTCAGATGCATCTAGAAGAAACGGCAATCAATTTAAGAAACGTAAATTCGGGTCAATTCCGGGCAGCCCGAACGGCGTGATAGACGTGTCATTCAGCTCCGATAGCTCGAATGAGTCATGGTCAGTGGCCTCGTCGGATTCATCTTCGCCAGAGCCTTCAACGAAGAAGAACAGAGCAATGGATCATCTGCCACTGGAGATGGCGAACCATTCAACAGCTACAAATTGCCTCGACATGTCAAACTATAAAAGAATTATTGTGTTTTCAGTTTTCCCATTGGGCTTATTAGTTGGTCTCTCAGCCTTTGTGGTTGGAGGTTTGGACTGTAAGCGGGAATCCTGGTGTGAGTTGAAAAGTGTGCAGAACCTTCGATCCATGGAGTCTATGAGGAAGGACGTGGATCGGATTAAGGGTCCGTGGAGTCCAGAGGAGGATGAGTCGTTGAAGAGATTGGTTCAAACCTACGGACCCAGAAATTGGTCGCTGATCAGTAAGTCGGTTCCTGGTCGTTCTGGAAAATCTTGCCGTCTCCGATGGTGTAATCAGCTTTCTCCTCGGGTTGAGCACCGGCCGTTTACTGCTGAAGAGGATAACGCCATTATCAGAGCTCACGCCAAATTTGGGAATAAGTGGGCCACCATTGCTCGCCTTTTGAATGGCCGCACGGATAACGCGATTAAGAATCACTGGAATTCGACGCTCAAGCGTAAATGCTCCGCCATGGGTGATGATTTCAACGACCCGGATTTGCATCAGCCTCTGAAGAGATCTGCCAGCGTTGGTCCAGGTCCAGTCATCGTCGCTTCCGGGTTTGGGTTTAACCCGAGTAGTCCATCCGGATCCGAGTTGAGCGACTCGTCTCTATCGCCGCCGCTTCCCGTATACAGACCCTTAGCTAGAAGCGGTTCGATTGTTCCGTCGAATCATGAGCAGGTTGCGAACTCCAACGATCCTCCAACCTCACTGTGCCTCTCATTGCCAGGATCCATTTCGACATCCGGGTATGCATCGGATTCAGTCGCGAGCCCGACCCGGAATATGGTTCAGGCAACTCCTACCACAGGCGGGGTTGGCAGAGAATCGGAGTTATTTAGTGCGGAGTTCTTAGGTGCGATGCAGGAGATGATAAAAATCGAAGTGAGGAAGTACATGTCTGGAATAGAGCATAAGGGTTGGCATTTGCAGACGGATGCCATCAGAAACGCTGTGGTGAAGCGTATTGGAATAAGCAAGATCGATTAG 2064 49.03 MVPPYALDALYCSEEHWEEDDNEERGFDHQPYSTLTTDSTSPILAEQDLFWDDHELISLLSKERPNELFKSIQIDPSLAAARRRAVDWMLKISAHYSFSALTAVLAVDYFDRFLSCFHFQTDKPWMSQLAAVACISLAAKVEETQVPLLLDLQVEDSRYLFETKTIKKMELLVLSTLEWRMNPVTPFSFVDYISRRLGFKDHICREILRQCERTVLSVILDSDFMSFLPSVMATATMLHAFKAMEPHFGVEYDSQLLTILGIEKGNVEECCKLISDASRRNGNQFKKRKFGSIPGSPNGVIDVSFSSDSSNESWSVASSDSSSPEPSTKKNRAMDHLPLEMANHSTATNCLDMSNYKRIIVFSVFPLGLLVGLSAFVVGGLDCKRESWCELKSVQNLRSMESMRKDVDRIKGPWSPEEDESLKRLVQTYGPRNWSLISKSVPGRSGKSCRLRWCNQLSPRVEHRPFTAEEDNAIIRAHAKFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSAMGDDFNDPDLHQPLKRSASVGPGPVIVASGFGFNPSSPSGSELSDSSLSPPLPVYRPLARSGSIVPSNHEQVANSNDPPTSLCLSLPGSISTSGYASDSVASPTRNMVQATPTTGGVGRESELFSAEFLGAMQEMIKIEVRKYMSGIEHKGWHLQTDAIRNAVVKRIGISKID 687
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 696188 702772 - CmoCh05G001630.1 Cmo05g00163 382298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00163 687 CDD SANT 413 455 IPR001005 -
Cmo05g00163 687 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 406 461 IPR017930 -
Cmo05g00163 687 PANTHER CYCLINS 36 331 IPR039361 -
Cmo05g00163 687 Pfam Myb-like DNA-binding domain 411 457 IPR001005 -
Cmo05g00163 687 Pfam Myb-like DNA-binding domain 465 507 IPR001005 -
Cmo05g00163 687 ProSitePatterns Cyclins signature. 82 113 IPR006671 -
Cmo05g00163 687 Pfam Cyclin, C-terminal domain 184 287 IPR004367 -
Cmo05g00163 687 Gene3D - 464 530 - -
Cmo05g00163 687 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 463 512 IPR017930 -
Cmo05g00163 687 SMART sant 410 459 IPR001005 -
Cmo05g00163 687 SMART sant 462 510 IPR001005 -
Cmo05g00163 687 Gene3D - 67 182 - -
Cmo05g00163 687 SUPERFAMILY Cyclin-like 78 182 IPR036915 -
Cmo05g00163 687 SMART cyclin_7 87 175 IPR013763 -
Cmo05g00163 687 CDD SANT 465 508 IPR001005 -
Cmo05g00163 687 SUPERFAMILY Homeodomain-like 408 504 IPR009057 -
Cmo05g00163 687 SUPERFAMILY Cyclin-like 166 279 IPR036915 -
Cmo05g00163 687 CDD CYCLIN 82 174 IPR013763 -
Cmo05g00163 687 Gene3D - 410 462 - -
Cmo05g00163 687 ProSiteProfiles Myb-like domain profile. 458 508 IPR001005 -
Cmo05g00163 687 PANTHER CYCLIN D3.1 PROTEIN 36 331 - -
Cmo05g00163 687 Pfam Cyclin, N-terminal domain 72 182 IPR006671 -
Cmo05g00163 687 ProSiteProfiles Myb-like domain profile. 406 457 IPR001005 -
Cmo05g00163 687 SMART Cyclin_C_2 184 309 IPR004367 -
Cmo05g00163 687 Gene3D - 183 272 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00163 Cmo09g00254 CCT
Cmo01g01869 Cmo05g00163 CCT
Cmo05g00163 Cmo09g00254 ECH
Cmo01g01869 Cmo05g00163 ECH
Cmo05g00163 Cmo12g00510 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01869 Cmo-Chr1:13549712 Cmo05g00163 Cmo-Chr5:696188 4.70E-97 dispersed
Cmo04g00142 Cmo-Chr4:735124 Cmo05g00163 Cmo-Chr5:696188 2.52E-53 dispersed
Cmo05g00163 Cmo-Chr5:696188 Cmo12g00510 Cmo-Chr12:3144150 2.58E-156 dispersed
Cmo16g00365 Cmo-Chr16:1672129 Cmo05g00163 Cmo-Chr5:696188 6.83E-63 dispersed
Cmo19g00602 Cmo-Chr19:6691342 Cmo05g00163 Cmo-Chr5:696188 9.34E-76 dispersed
Cmo20g00982 Cmo-Chr20:5510872 Cmo05g00163 Cmo-Chr5:696188 2.32E-81 dispersed
Cmo01g01866 Cmo-Chr1:13541808 Cmo05g00163 Cmo-Chr5:696188 1.81E-106 wgd
Cmo11g01386 Cmo-Chr11:9696714 Cmo05g00163 Cmo-Chr5:696188 7.36E-70 wgd
Cmo12g00516 Cmo-Chr12:3170925 Cmo05g00163 Cmo-Chr5:696188 8.60E-156 wgd
Cmo04g00511 Cmo-Chr4:2537126 Cmo05g00163 Cmo-Chr5:696188 7.06E-94 wgd
Cmo05g00163 Cmo-Chr5:696188 Cmo07g00692 Cmo-Chr7:3128306 3.51E-95 wgd
Cmo05g00163 Cmo-Chr5:696188 Cmo09g00254 Cmo-Chr9:1141404 1.65E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9781 PF02984 Cyclin_C 9.00E-17 CL0065 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00163 K14505 - csv:101205442 519.62