Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00169 ATGGGATCAAGCATGAAGGTTCATCAGTTCGCACGTGGATTTTGGGACGAACCCTCCCTCTCCCTCGGCTGCAAGCGCTTACGCCCTCTTGCCCCTAAGCTTCAACAACAACAACACCAACAACAACGACATCCCTCCTCCTCCTCCTCCGATCATAACACTACCACCACCACGCTCACCACTTTGGACCTCAAGACCTTCATCCGACCCGATTGTGGCCCCAGAAAACTGGGTTCCTCTCATGACCACAACAAAGGCTCTTCTTCCTCTTCTTCCTCTTCTTCCCCCCAGACGGCAGTGGAGACACATCCCGGGGGGACGCGGTGGAATCCAACCCAAGAACAGATTGGGATATTGGAGATGCTGTACAGCAGAGGAATGAGGACTCCCAATGCCCAACAGATTGAGCACATCACTGCCCAGCTCGGCAACTACGGCAAGATCGAAGGCAAGAACGTGTTCTATTGGTTTCAAAACCACAAAGCCCGTGAGCGACAGAAACAGAAGCGCAACAGCCTGGGTCTTCCCCACTCCCCCAGAACCCCCCCTCCTCCCATCCTCCCCACCTTCCACCCTTCTTTCCCGGGAGAGGAAGACAGTCCGTACAAGAAGAAGTGCTTGTACTGGGGGTTTGAGTGTTTGGTAGAACATAACGGTATATTGTGTAAAAGGGAGGACGGTGATAGGACTCTGGAGTTATTCCCGTTGCACCCAGAAGGCAGATGA 726 53.58 MGSSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQQQHQQQRHPSSSSSDHNTTTTTLTTLDLKTFIRPDCGPRKLGSSHDHNKGSSSSSSSSSPQTAVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPILPTFHPSFPGEEDSPYKKKCLYWGFECLVEHNGILCKREDGDRTLELFPLHPEGR 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 728097 729169 + CmoCh05G001690.1 Cmo05g00169 382304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00169 241 PANTHER WUSCHEL-RELATED HOMEOBOX 4 5 241 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Cmo05g00169 241 MobiDBLite consensus disorder prediction 83 112 - -
Cmo05g00169 241 MobiDBLite consensus disorder prediction 32 112 - -
Cmo05g00169 241 SUPERFAMILY Homeodomain-like 103 173 IPR009057 -
Cmo05g00169 241 Gene3D - 106 173 - -
Cmo05g00169 241 ProSiteProfiles 'Homeobox' domain profile. 102 167 IPR001356 GO:0003677
Cmo05g00169 241 MobiDBLite consensus disorder prediction 33 64 - -
Cmo05g00169 241 SMART HOX_1 104 171 IPR001356 GO:0003677
Cmo05g00169 241 CDD homeodomain 107 168 IPR001356 GO:0003677
Cmo05g00169 241 Pfam Homeodomain 107 166 IPR001356 GO:0003677
Cmo05g00169 241 MobiDBLite consensus disorder prediction 165 186 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00169 Cmo12g00505 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00169 Cmo-Chr5:728097 Cmo11g00316 Cmo-Chr11:1528835 1.88E-28 dispersed
Cmo12g00505 Cmo-Chr12:3110440 Cmo05g00169 Cmo-Chr5:728097 4.60E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9783 PF00046 Homeodomain 1.10E-18 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00169 - - cpep:111805075 398.667