Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo05g00169 | ATGGGATCAAGCATGAAGGTTCATCAGTTCGCACGTGGATTTTGGGACGAACCCTCCCTCTCCCTCGGCTGCAAGCGCTTACGCCCTCTTGCCCCTAAGCTTCAACAACAACAACACCAACAACAACGACATCCCTCCTCCTCCTCCTCCGATCATAACACTACCACCACCACGCTCACCACTTTGGACCTCAAGACCTTCATCCGACCCGATTGTGGCCCCAGAAAACTGGGTTCCTCTCATGACCACAACAAAGGCTCTTCTTCCTCTTCTTCCTCTTCTTCCCCCCAGACGGCAGTGGAGACACATCCCGGGGGGACGCGGTGGAATCCAACCCAAGAACAGATTGGGATATTGGAGATGCTGTACAGCAGAGGAATGAGGACTCCCAATGCCCAACAGATTGAGCACATCACTGCCCAGCTCGGCAACTACGGCAAGATCGAAGGCAAGAACGTGTTCTATTGGTTTCAAAACCACAAAGCCCGTGAGCGACAGAAACAGAAGCGCAACAGCCTGGGTCTTCCCCACTCCCCCAGAACCCCCCCTCCTCCCATCCTCCCCACCTTCCACCCTTCTTTCCCGGGAGAGGAAGACAGTCCGTACAAGAAGAAGTGCTTGTACTGGGGGTTTGAGTGTTTGGTAGAACATAACGGTATATTGTGTAAAAGGGAGGACGGTGATAGGACTCTGGAGTTATTCCCGTTGCACCCAGAAGGCAGATGA | 726 | 53.58 | MGSSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQQQHQQQRHPSSSSSDHNTTTTTLTTLDLKTFIRPDCGPRKLGSSHDHNKGSSSSSSSSSPQTAVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPILPTFHPSFPGEEDSPYKKKCLYWGFECLVEHNGILCKREDGDRTLELFPLHPEGR | 241 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 728097 | 729169 | + | CmoCh05G001690.1 | Cmo05g00169 | 382304 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo05g00169 | 241 | PANTHER | WUSCHEL-RELATED HOMEOBOX 4 | 5 | 241 | IPR044186 | GO:0003700|GO:0010067|GO:0010087|GO:0051301 | |
Cmo05g00169 | 241 | MobiDBLite | consensus disorder prediction | 83 | 112 | - | - | |
Cmo05g00169 | 241 | MobiDBLite | consensus disorder prediction | 32 | 112 | - | - | |
Cmo05g00169 | 241 | SUPERFAMILY | Homeodomain-like | 103 | 173 | IPR009057 | - | |
Cmo05g00169 | 241 | Gene3D | - | 106 | 173 | - | - | |
Cmo05g00169 | 241 | ProSiteProfiles | 'Homeobox' domain profile. | 102 | 167 | IPR001356 | GO:0003677 | |
Cmo05g00169 | 241 | MobiDBLite | consensus disorder prediction | 33 | 64 | - | - | |
Cmo05g00169 | 241 | SMART | HOX_1 | 104 | 171 | IPR001356 | GO:0003677 | |
Cmo05g00169 | 241 | CDD | homeodomain | 107 | 168 | IPR001356 | GO:0003677 | |
Cmo05g00169 | 241 | Pfam | Homeodomain | 107 | 166 | IPR001356 | GO:0003677 | |
Cmo05g00169 | 241 | MobiDBLite | consensus disorder prediction | 165 | 186 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo05g00169 | Cmo12g00505 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g00169 | Cmo-Chr5:728097 | Cmo11g00316 | Cmo-Chr11:1528835 | 1.88E-28 | dispersed | |
Cmo12g00505 | Cmo-Chr12:3110440 | Cmo05g00169 | Cmo-Chr5:728097 | 4.60E-75 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9783 | PF00046 | Homeodomain | 1.10E-18 | CL0123 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo05g00169 | - | - | cpep:111805075 | 398.667 |