Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00171 ATGCAAGGGCAAAGGAGTAGTGTCGGTTCATTGTCAGAAACAATTAACTTTGAACATGGATCTTCATCAAATAATCCTGGTAACCAACCAGTTTACTGGAATAACATGTGGAATCCAGCAGAAAACCGAATACCAGATTATTTATTGCCTACTTCTGATGTAAATTCTGGATATGTAAGCTCTGTAAGCCATGAACAACGAAGTTTGAGCAGATGGAGCTTGGGTGAACCTAGCTCTTGTGATATGCAAACTGATGTGCTGCCTGATGAGCAGAAAGCTGAGCTTGGATGGTCTTCAATGACTCGTGATGCAGATGGTCCCTTCACCGAAAACCAACTCTGTGAGCCATCAAATAATCCTTCACTGGGTCATGTGAATTTGAGCCCACTGATTATACAAAATTCTAATTCTAATAGTATTCCTCATACTCTGAATTTAAATGCAAGTTTTGCTAGTCATGGAGGTGACAGTAGCAGAGTTAACGAAGGTACTAACGTGTATAAATCGAGTGGATCAGAAGAAGGGGGGATTTTATGTTCTAGTGCATCTGATCCTCTTTTACTTCCTTCTGGAAGTAGTGGACTTCCAATGGTTGCAAATGATGGTAGAGCAGGCTCTTCCTTGGAAGGCCGTCGTGCACCCTGCAAAAGAAAATCTATTGAAGGAAATGTTGCACAGTCCTCTTTAAGCGGAAGCAGTAGCTACTCTCAGCATATTGAAAGGGGTGCTGAGCCCCCTCTTCCAGCATTACCTGGTCGCTACAACACAGGAAGTAGGTTAAGCATACCTGCTCCACTAGCACGAATGAATCAAGCCCCTATACGAGGTACAGGTGAATTGATGTCCAATAGCTTCTCTGAGTCGATTGTTGCGGAAAACTCAGACAGTTCTCAACGAAACTATCGTATACGGATTAGTTCATCAAATGCACAAGATTCTTTTGCATCGGTAGGAACCGTTGTTAGGCATCCTGGGGGCCCATCTTCCCAGCCGCCAGCAAGACTTCTACCTGCTGAGCATGTATTAGACTTGAGGCCAGCAGCAGCTGTAGACAATTTATCTGCTCAAGGTCAGCCTATTATGATACACGTGCCTGCTTTATCTCGAAGTCTGCAGCCATATAGGTGGATTAGAAGTTCTACTTCAAGAAGTGGTAATTCATCAAGCTCTGCAGGAGAGAGGCAGGTGGTGCAACGTGAGGAGGTGAGACCAAACAACATGGGAAGAAACGTATCTGAACATCCTATGTTTGTCCCAGCAAATGAGCTGAGGAATATAGTTCAAAATCAATCAAGTAGAGGTTTAACATCTTCGAGCTTGCCCATTCCTGGAAATGTTGCTTCTACATCCAGGGTTGGTTCAAGTTCAGGGGTCCATCCCTCTTCTGGACCTTGGATTCCTCCTGAAAGTTCTCCGACACAGTTTCCCAGGAGGTTAACAGAATATGTTCGTAGGCAGCTATTTTCTTCTGCAACAAATGAGTCTGGGGGAAGGATAAATAATTATTCACAGCGATCAGGTTCTACTTTGGCTCAGGATATGGTTCTTTCATCTGGATCTGACCGCCGGGGGCACCATTTATTGCAACCGAGGTCAGCATTATGGATGGAAAGAAGAGGTGATGGTGGACTTGGTCTTCCCTATTCATTACGAACCTTGGCTACTTCTAATGAAGGAAGTGACAACAATAGACTTGTATCTGAGATTCGCAATGTCTTGGGCCTTGTTCGCAGGGGTGAAAGCTTACGAGTTGAGGTAGGATCCTTATTGGTTATGTATCATGGTCAAGTTGTGCATTGGCTAATTTACATGTTACAATGTGAAAATGGTGGTGAACAGCAACTTGTCTTGTTCATACTCCAGTATTCTTTTTCTAGTCCACAGATAGAAATAAAGCTTTCAGGTGCGCTTTTACTTGGGACAGGGCCTTGTGTTTATGTAATTATGCCTCCTTGGCTTGAAACTTCATTTGGGGCTCTGAGATATTTGTACATGGATGTGATGATCCTGGACCAGTCACTATTTTTTGGGATGGCTGATATGTATGATAGGCACAGGGATATGCGTCTGGACGTTGATAACATGTCATATGAGGTGGGCCTGATGCAAACTAACCAACTGAAGCCATTATTTCGCACCTTTTTCTTGTTGGAATTGTTGGCATTGGAAGAGCGTATCGGAAATGTCAACACAGGACTAAGTGAAGAGACGATAGTTGGTCGACTGAAACAAAAGAAGCATGTGAATGCTGTTGAATCACAGGTGGAGGAAGAACCATGCTGTGTTTGTCAGGAGGAATACGTCGAAGGAGATGACATGGGAACACTGGAATGCGGGCACGATTTCCACACGGATTGCATTAAGCAGTGGTTGATGCAGAAGAATCTGTGTCCCATCTGCAAAACAACTGGCATAGCAAGCCGAGAATGA 2430 43.95 MQGQRSSVGSLSETINFEHGSSSNNPGNQPVYWNNMWNPAENRIPDYLLPTSDVNSGYVSSVSHEQRSLSRWSLGEPSSCDMQTDVLPDEQKAELGWSSMTRDADGPFTENQLCEPSNNPSLGHVNLSPLIIQNSNSNSIPHTLNLNASFASHGGDSSRVNEGTNVYKSSGSEEGGILCSSASDPLLLPSGSSGLPMVANDGRAGSSLEGRRAPCKRKSIEGNVAQSSLSGSSSYSQHIERGAEPPLPALPGRYNTGSRLSIPAPLARMNQAPIRGTGELMSNSFSESIVAENSDSSQRNYRIRISSSNAQDSFASVGTVVRHPGGPSSQPPARLLPAEHVLDLRPAAAVDNLSAQGQPIMIHVPALSRSLQPYRWIRSSTSRSGNSSSSAGERQVVQREEVRPNNMGRNVSEHPMFVPANELRNIVQNQSSRGLTSSSLPIPGNVASTSRVGSSSGVHPSSGPWIPPESSPTQFPRRLTEYVRRQLFSSATNESGGRINNYSQRSGSTLAQDMVLSSGSDRRGHHLLQPRSALWMERRGDGGLGLPYSLRTLATSNEGSDNNRLVSEIRNVLGLVRRGESLRVEVGSLLVMYHGQVVHWLIYMLQCENGGEQQLVLFILQYSFSSPQIEIKLSGALLLGTGPCVYVIMPPWLETSFGALRYLYMDVMILDQSLFFGMADMYDRHRDMRLDVDNMSYEVGLMQTNQLKPLFRTFFLLELLALEERIGNVNTGLSEETIVGRLKQKKHVNAVESQVEEEPCCVCQEEYVEGDDMGTLECGHDFHTDCIKQWLMQKNLCPICKTTGIASRE 809
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 738564 742311 + CmoCh05G001710.1 Cmo05g00171 382306

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00171 809 CDD RING-H2_TTC3 759 801 - -
Cmo05g00171 809 MobiDBLite consensus disorder prediction 430 461 - -
Cmo05g00171 809 MobiDBLite consensus disorder prediction 1 30 - -
Cmo05g00171 809 Pfam Ring finger domain 760 801 IPR001841 -
Cmo05g00171 809 MobiDBLite consensus disorder prediction 221 239 - -
Cmo05g00171 809 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 575 IPR045191 GO:0061630
Cmo05g00171 809 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 656 805 IPR045191 GO:0061630
Cmo05g00171 809 MobiDBLite consensus disorder prediction 192 251 - -
Cmo05g00171 809 MobiDBLite consensus disorder prediction 153 173 - -
Cmo05g00171 809 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 724 804 IPR013083 -
Cmo05g00171 809 SUPERFAMILY RING/U-box 754 803 - -
Cmo05g00171 809 MobiDBLite consensus disorder prediction 379 414 - -
Cmo05g00171 809 MobiDBLite consensus disorder prediction 430 474 - -
Cmo05g00171 809 MobiDBLite consensus disorder prediction 379 395 - -
Cmo05g00171 809 ProSiteProfiles Zinc finger RING-type profile. 760 801 IPR001841 -
Cmo05g00171 809 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 575 - -
Cmo05g00171 809 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 656 805 - -
Cmo05g00171 809 SMART ring_2 760 800 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00171 - - - csv:101203243 989.564
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00171 Cmo-Chr5:738564 Cmo05g00655 Cmo-Chr5:3303682 4.48E-31 dispersed
Cmo18g00042 Cmo-Chr18:256295 Cmo05g00171 Cmo-Chr5:738564 2.18E-21 dispersed
Cmo12g00503 Cmo-Chr12:3099713 Cmo05g00171 Cmo-Chr5:738564 1.70E-62 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g743 . . . . . . . . Cmo05g00171 . . . . . Sed11g0938 . . Bhi04g00370 Tan02g1797 . . . . . Cla08g01584 Cam08g2081 Cec08g1664 Cco08g1793 Clacu08g1767 . Cre08g1552 Cone4ag1588 Cone7ag1361 Cone17ag0852 Cone20ag0198 . . . . . . . . . Bpe05g00370 . . . . . . Cma05g00173 Car05g00146 . Cpe11g00142 . . . . . . . . . . . . . . . Lsi08g01487 Csa02g01933 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002893 2 4 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 9 6 2 55
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00171 Cmo_Chr05 FPKM 14.3233 12.73649 32.553844 27.763704 10.153497 11.014698 10.166617 2.548376 2.076523 2.686171