Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00173 ATGTCTAGTTATGCCTTCTTGAATGACCAGCTCTCCAAGCGGACCTCCATTTTCGGTTTGCGCTTGTGGGTCGTTTTGGGTATTGGCGTTGGTGCCGCCATTGTTATTGTTCTGTTCCTCATTTCGCTATGGTTCACCTCCAGGCGCAACAGTTCCAATAAATCTAAGTCCTCTCTAAACCCCACTATCCCGAATGTGTCCAAGGAAATCCAGGAAATACGAATCGACCATTCTCGGAATCCAACTCATTCTGATCCTCCTAAAGTTCAAGTGGCTTCGAACCCTGAGCCCTTGCCGGAGGCAGAGCCTTTAGCGACGCTGCTTCAGACGGAAGAAGGGAGCCCACCTAGTGGACGCCATAGAATTCACATTGAAATTGGGAAGGACCACCGGATTTCTTATCCGGAGAGAGTCGGCGGTTCATCCCACGGTAGCGGAGAGGTTCGGTCCGGTGACCAGGCGCAGGTGGTTGTGCCGGAGGTTTCCCATTTGGGTTGGGGACATTGGTACACTCTCAGAGAGCTCGAGTATTCTACTGCTGGTTTTTCGGATGAAAATGTAATCGGTGAGGGCGGATATGGTATTGTGTACCGTGGTGTTCTGGAGGACAACACTGTGGTTGCTATAAAAAATTTGCTCAATAACAGGGGACAGGCCGAGAGAGAGTTTAAGGTTGAAGTTGAAGCAATTGGACGCGTACGGCACAAGAATCTGGTGCGTTTGCTCGGCTATTGTGCAGAAGGAGCTCACAGGATGCTTGTTTATGAGTACGTCGATAATGGAAACTTGGAACAGTGGCTTCATGGAGAAGTTGGGCCTTGTAGTCCTCTCACATGGGACATTCGAATGAATATAATTGTTGGAACAGCGAAAGGGTTAACATACCTCCATGAGGGGCTTGAGCCTAAGGTTGTTCACCGTGATATCAAGTCAAGTAACATTTTGCTTGATAAGCAGTGGAATACAAAGGTCTCTGACTTTGGCCTAGCAAAGCTTCTAGGCTCAGAGAGGAGTTACGTAACAACTCGTGTGATGGGAACTTTCGGATATGTAGCTCCAGAATATGCGAGTACTGGCATGTTAAATGAAAAAAGTGATGTATATAGTTTTGGCATCCTGATTATGGAGATAATTACAGGGAGAAATCCAGTAGATTATAGCCGCCCTTCAGGAGAGGTCAACCTAGTTGAGTGGCTTAAAACAATGGTTAGTAATCGAAACGCAGAGGGAGTTCTGGATCCTAAGTTGCCTGAGAAGCCTTCAACAAGGGCACTGAAGCGTGCTCTGCTAGTAGCTTTACGATGTGTGGATCCTAATGTTCAGAAGAGGCCTAAAATGGGGCATGTCATTCATATGCTTGAAGCTGACGAGTTCCCTTTCCGAGATGATCGTAGAGTGGGACGGGAAGGGGGACGATCAGTACTGAAGGAAAGGCTGATGGAAAGGCTTGTGAGTGAATCTGGAGAGAGCAGCGGATATGAAAGTGGAGCAACACAAGCAAGCCGTCATCTATGGAGAAGGCAAGAACTGGAAGAACAACAACAACCTCGCGAACCTCACACTTTAAGGTGA 1572 47.65 MSSYAFLNDQLSKRTSIFGLRLWVVLGIGVGAAIVIVLFLISLWFTSRRNSSNKSKSSLNPTIPNVSKEIQEIRIDHSRNPTHSDPPKVQVASNPEPLPEAEPLATLLQTEEGSPPSGRHRIHIEIGKDHRISYPERVGGSSHGSGEVRSGDQAQVVVPEVSHLGWGHWYTLRELEYSTAGFSDENVIGEGGYGIVYRGVLEDNTVVAIKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYVDNGNLEQWLHGEVGPCSPLTWDIRMNIIVGTAKGLTYLHEGLEPKVVHRDIKSSNILLDKQWNTKVSDFGLAKLLGSERSYVTTRVMGTFGYVAPEYASTGMLNEKSDVYSFGILIMEIITGRNPVDYSRPSGEVNLVEWLKTMVSNRNAEGVLDPKLPEKPSTRALKRALLVALRCVDPNVQKRPKMGHVIHMLEADEFPFRDDRRVGREGGRSVLKERLMERLVSESGESSGYESGATQASRHLWRRQELEEQQQPREPHTLR 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 747084 750338 + CmoCh05G001730.1 Cmo05g00173 382308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00173 523 MobiDBLite consensus disorder prediction 77 96 - -
Cmo05g00173 523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 304 316 IPR008271 GO:0004672|GO:0006468
Cmo05g00173 523 SMART serkin_6 182 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g00173 523 ProSitePatterns Protein kinases ATP-binding region signature. 188 210 IPR017441 GO:0005524
Cmo05g00173 523 Gene3D Transferase(Phosphotransferase) domain 1 258 464 - -
Cmo05g00173 523 MobiDBLite consensus disorder prediction 483 523 - -
Cmo05g00173 523 SUPERFAMILY Protein kinase-like (PK-like) 163 454 IPR011009 -
Cmo05g00173 523 Gene3D Phosphorylase Kinase; domain 1 149 257 - -
Cmo05g00173 523 PANTHER RECEPTOR-LIKE KINASE PLANT 5 498 - -
Cmo05g00173 523 PANTHER OS01G0323000 PROTEIN 5 498 - -
Cmo05g00173 523 MobiDBLite consensus disorder prediction 488 502 - -
Cmo05g00173 523 MobiDBLite consensus disorder prediction 504 523 - -
Cmo05g00173 523 Pfam Protein kinase domain 183 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g00173 523 ProSiteProfiles Protein kinase domain profile. 182 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g00173 523 CDD STKc_IRAK 188 454 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00173 Cmo-Chr5:747084 Cmo14g02120 Cmo-Chr14:15315376 0 dispersed
Cmo12g00502 Cmo-Chr12:3086885 Cmo05g00173 Cmo-Chr5:747084 1.03E-62 dispersed
Cmo05g00173 Cmo-Chr5:747084 Cmo07g00711 Cmo-Chr7:3210008 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74339 PF00069 Pkinase 6.70E-48 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00173 - - cpep:111805169 967.607