Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00176 ATGGATGTTCTGACTCAGATGGAAAATTTTTCTGAGTTCTTTGAATTTACCGATTTTGGGAGTTCCACTTCACACCGCTTTCAAAACCCAACTCCCCCCATTCTCCCTTCTTATGCTCTCTCATCCACCGCTTCAATGAACAACGCCACTCACCCTCTTGCACCACCCTGTCCTCCACCCCATTCCCCTGCTGCCACCCCAAACTCCCACACGAAGCAGCAGCAAGATTCAATGGGCGCGATGAGGGAGATGATATATAGGATAGCGGCGATGCAGCCGATCCAGATTGACCCAGAAGCGGTTAAGCCACCAAAGCGGCGGAATGTGAAGATATCAAAAGATCCACAGAGCGTAGCGGCGCGGCATAGAAGAGAGAGAATAAGCGAGAGAATTAGAATACTTCAGAGAATAGTCCCCGGCGGCACCAAAATGGACACCGCTTCCATGTTAGACGAGGCCATTCATTACGTTAAGTTCTTGAAAAGCCAAGTCCAATCCCTCCAAATAGCCGCCAACAACCGCCCCTCCTCTGCCTTTCGCTTTCCGGCAGCGATGTCCGCCGGTGGAAGCAACTACAAGCAATTCCAGTTTGCTCAAAGTGGACATGAGCACGTGGAGGATGCTTGA 627 50.88 MDVLTQMENFSEFFEFTDFGSSTSHRFQNPTPPILPSYALSSTASMNNATHPLAPPCPPPHSPAATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKSQVQSLQIAANNRPSSAFRFPAAMSAGGSNYKQFQFAQSGHEHVEDA 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 764159 765057 + CmoCh05G001760.1 Cmo05g00176 382311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00176 208 Pfam Helix-loop-helix DNA-binding domain 121 160 IPR011598 GO:0046983
Cmo05g00176 208 SMART finulus 117 166 IPR011598 GO:0046983
Cmo05g00176 208 MobiDBLite consensus disorder prediction 46 75 - -
Cmo05g00176 208 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 25 197 IPR045843 GO:0003700|GO:0006355
Cmo05g00176 208 Gene3D - 110 178 IPR036638 GO:0046983
Cmo05g00176 208 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 111 160 IPR011598 GO:0046983
Cmo05g00176 208 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 115 168 IPR036638 GO:0046983
Cmo05g00176 208 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 25 197 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00176 Cmo09g00229 CCT
Cmo05g00176 Cmo09g00229 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01075 Cmo-Chr3:8046980 Cmo05g00176 Cmo-Chr5:764159 3.86E-37 dispersed
Cmo05g00176 Cmo-Chr5:764159 Cmo07g00819 Cmo-Chr7:3798815 1.17E-47 dispersed
Cmo05g00176 Cmo-Chr5:764159 Cmo09g00229 Cmo-Chr9:1062565 1.58E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9786 PF00010 HLH 1.40E-06 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00176 - - cmos:111462825 380.178