Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo05g00176 | ATGGATGTTCTGACTCAGATGGAAAATTTTTCTGAGTTCTTTGAATTTACCGATTTTGGGAGTTCCACTTCACACCGCTTTCAAAACCCAACTCCCCCCATTCTCCCTTCTTATGCTCTCTCATCCACCGCTTCAATGAACAACGCCACTCACCCTCTTGCACCACCCTGTCCTCCACCCCATTCCCCTGCTGCCACCCCAAACTCCCACACGAAGCAGCAGCAAGATTCAATGGGCGCGATGAGGGAGATGATATATAGGATAGCGGCGATGCAGCCGATCCAGATTGACCCAGAAGCGGTTAAGCCACCAAAGCGGCGGAATGTGAAGATATCAAAAGATCCACAGAGCGTAGCGGCGCGGCATAGAAGAGAGAGAATAAGCGAGAGAATTAGAATACTTCAGAGAATAGTCCCCGGCGGCACCAAAATGGACACCGCTTCCATGTTAGACGAGGCCATTCATTACGTTAAGTTCTTGAAAAGCCAAGTCCAATCCCTCCAAATAGCCGCCAACAACCGCCCCTCCTCTGCCTTTCGCTTTCCGGCAGCGATGTCCGCCGGTGGAAGCAACTACAAGCAATTCCAGTTTGCTCAAAGTGGACATGAGCACGTGGAGGATGCTTGA | 627 | 50.88 | MDVLTQMENFSEFFEFTDFGSSTSHRFQNPTPPILPSYALSSTASMNNATHPLAPPCPPPHSPAATPNSHTKQQQDSMGAMREMIYRIAAMQPIQIDPEAVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRIVPGGTKMDTASMLDEAIHYVKFLKSQVQSLQIAANNRPSSAFRFPAAMSAGGSNYKQFQFAQSGHEHVEDA | 208 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 764159 | 765057 | + | CmoCh05G001760.1 | Cmo05g00176 | 382311 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo05g00176 | 208 | Pfam | Helix-loop-helix DNA-binding domain | 121 | 160 | IPR011598 | GO:0046983 | |
Cmo05g00176 | 208 | SMART | finulus | 117 | 166 | IPR011598 | GO:0046983 | |
Cmo05g00176 | 208 | MobiDBLite | consensus disorder prediction | 46 | 75 | - | - | |
Cmo05g00176 | 208 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 25 | 197 | IPR045843 | GO:0003700|GO:0006355 | |
Cmo05g00176 | 208 | Gene3D | - | 110 | 178 | IPR036638 | GO:0046983 | |
Cmo05g00176 | 208 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 111 | 160 | IPR011598 | GO:0046983 | |
Cmo05g00176 | 208 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 115 | 168 | IPR036638 | GO:0046983 | |
Cmo05g00176 | 208 | PANTHER | BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN | 25 | 197 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo05g00176 | Cmo09g00229 | CCT | |
Cmo05g00176 | Cmo09g00229 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo03g01075 | Cmo-Chr3:8046980 | Cmo05g00176 | Cmo-Chr5:764159 | 3.86E-37 | dispersed | |
Cmo05g00176 | Cmo-Chr5:764159 | Cmo07g00819 | Cmo-Chr7:3798815 | 1.17E-47 | dispersed | |
Cmo05g00176 | Cmo-Chr5:764159 | Cmo09g00229 | Cmo-Chr9:1062565 | 1.58E-50 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9786 | PF00010 | HLH | 1.40E-06 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo05g00176 | - | - | cmos:111462825 | 380.178 |