Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00178 ATGTTTTTAGTTTTGACTTCTGCTTCAGTTCCCCACAGTTTGATTCTTCATCTTCCTCTGTCAAATCCAGATATATCCTTTGGGAGAGCTGTTCTTAGAGGAAGTAGAGTGAGGAAGGCGCCGGAGATGGGGTTTCAGGACCAAACGCCGTCGTCGAGATCAGGCTTCAGAGCTCGCGATTCCAGCCCCGATTCTGTCATTTACGCTCTCGAATCGAGTTTCAGTCTCTTCTCTTCTGCCTCCGCCAGTGTGGAGCGCTGCTCGTTTGCATCGGAGGCCCACGACCGCGATTCCCTCATCTCTGAAATCTCACTTCATTTGGCAGAGCATGATGAGGAAGACCACGAGAGTTGCGGTGGTCCAAATCCAGATCCAAACAAACTTGCACTAAACAACAAGCACAGTCGTCTCTATACCAAGGGAGAAAAAGCGAAAGCAATTCAGAACGAAGATAGCAATGTCGATTTAGAAGACGAGAATCGAGCTGTCGATTCGGCCAGGAGTTCCTTTTCTCTTGCCCTGAAAGAGTGTCAAGATCATAGATCCAGATCTGAAGTTCAATCCAGGAAGCTGGACAGAAGGAGACCTGCTTCATTGGATCTAAATAACGCCACTACAGCTTCCTCACCTCGTTTGGCAAGTATCAAGAAGAACCCTAAAGTATCAACACGGAAGACCGGAACATTTCCAAGCCCTGTGACGCCTAATTATCGGCACAATAGCTTTGGTATGCAAAAGGGGTGGAGCTCGGAGCGAGTGCCATTGCACAACAATGGTGGTCGGAAACATACTAATAACCCTGCATTGCTGACTCTCAACAGTGGCAGAACATTGCCATCGAAGTGGGAAGATGCTGAAAGTTCATCTGGTATGCATATGTTAGAGGTGGGAGGTGTGAGCTCTAAGTTGGAGGTGAGGGATGTACAAGTGGATAACCAGGTTACTTTGACAAGGTGGTCTAAGAAACAAAAAGCGGCATTTCCTTGGAAAGACTCTGTTGACGACAGGAGGAAGAAAGACGGTGATGCGGTTTCTGGATGTTCAGATTTAGATGTCCCTAGCATAGGAAAAAGCATTTCAAAGGTTAAGCGTGAGGAAGCCAAAATAAGCGCATGGGAAAATCTACAGAAAGCAAAAGCCGATGCAGCCATACGAAAACTAGAGATGAAACTGGAAAAGAAGAGAGCGTCATCAATGGATAAGATCATGAATAAACTGAAATCTGCACAGAAGAAAGCCCAAGAAATGAGGAGCTCAGTGATGGAAAACCAGTCCCCCCGAGACAACAGGACATCTTCTTCTATCAAGTCTCTATCATCTTTTTATCGAACCCGTCATATGGGGTCCCTAAGTGGTTGTTTCACCTGCCATGCCTTTTAG 1380 46.45 MFLVLTSASVPHSLILHLPLSNPDISFGRAVLRGSRVRKAPEMGFQDQTPSSRSGFRARDSSPDSVIYALESSFSLFSSASASVERCSFASEAHDRDSLISEISLHLAEHDEEDHESCGGPNPDPNKLALNNKHSRLYTKGEKAKAIQNEDSNVDLEDENRAVDSARSSFSLALKECQDHRSRSEVQSRKLDRRRPASLDLNNATTASSPRLASIKKNPKVSTRKTGTFPSPVTPNYRHNSFGMQKGWSSERVPLHNNGGRKHTNNPALLTLNSGRTLPSKWEDAESSSGMHMLEVGGVSSKLEVRDVQVDNQVTLTRWSKKQKAAFPWKDSVDDRRKKDGDAVSGCSDLDVPSIGKSISKVKREEAKISAWENLQKAKADAAIRKLEMKLEKKRASSMDKIMNKLKSAQKKAQEMRSSVMENQSPRDNRTSSSIKSLSSFYRTRHMGSLSGCFTCHAF 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 767087 772366 - CmoCh05G001780.1 Cmo05g00178 382313

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00178 459 Coils Coil 399 419 - -
Cmo05g00178 459 MobiDBLite consensus disorder prediction 329 345 - -
Cmo05g00178 459 MobiDBLite consensus disorder prediction 176 197 - -
Cmo05g00178 459 PANTHER REMORIN FAMILY PROTEIN 291 457 - -
Cmo05g00178 459 MobiDBLite consensus disorder prediction 45 59 - -
Cmo05g00178 459 MobiDBLite consensus disorder prediction 413 434 - -
Cmo05g00178 459 MobiDBLite consensus disorder prediction 199 238 - -
Cmo05g00178 459 PANTHER OS02G0116800 PROTEIN 122 286 - -
Cmo05g00178 459 PANTHER OS02G0116800 PROTEIN 291 457 - -
Cmo05g00178 459 MobiDBLite consensus disorder prediction 329 349 - -
Cmo05g00178 459 MobiDBLite consensus disorder prediction 110 130 - -
Cmo05g00178 459 MobiDBLite consensus disorder prediction 40 59 - -
Cmo05g00178 459 MobiDBLite consensus disorder prediction 408 434 - -
Cmo05g00178 459 Coils Coil 377 397 - -
Cmo05g00178 459 PANTHER REMORIN FAMILY PROTEIN 122 286 - -
Cmo05g00178 459 MobiDBLite consensus disorder prediction 176 238 - -
Cmo05g00178 459 Pfam Remorin, C-terminal region 357 439 IPR005516 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00178 - - - cmax:111491992 488.034
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00178 Cmo09g00226 CCT
Cmo05g00178 Cmo09g00226 ECH
Cmo05g00178 Cmo12g00500 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00993 Cmo-Chr3:7464720 Cmo05g00178 Cmo-Chr5:767087 1.86E-07 dispersed
Cmo05g00178 Cmo-Chr5:767087 Cmo14g01246 Cmo-Chr14:10524571 4.11E-11 dispersed
Cmo12g00500 Cmo-Chr12:3073033 Cmo05g00178 Cmo-Chr5:767087 1.03E-66 wgd
Cmo05g00178 Cmo-Chr5:767087 Cmo07g00718 Cmo-Chr7:3234580 1.37E-10 wgd
Cmo05g00178 Cmo-Chr5:767087 Cmo09g00226 Cmo-Chr9:1051374 4.99E-49 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g756 . Blo12g00958 . Bda03g00210 . . Bma04g00162 . Cmo05g00178 Cmo12g00500 . Cma09g00233 . Car12g00511 Sed11g0942 . . Bhi04g00359 Tan02g1815 Cmetu03g0006 . Hepe08g1289 . Lcy13g2086 Cla08g01576 Cam08g2074 Cec08g1654 Cco08g1785 Clacu08g1761 . Cre08g1545 Cone4ag1581 Cone7ag1370 Cone17ag0845 Cone20ag0193 Lsi04g01558 Csa04g02412 . Cme03g02054 Blo17g00880 . . . . Bpe05g00024 . Bma05g00037 Sed13g1753 . Cmo09g00226 Cma12g00556 . Car05g00152 . . . Bhi09g03315 Tan01g4778 Cmetu07g0900 . . . . Cla05g02044 Cam05g2194 Cec05g2212 Cco05g2257 Clacu05g2188 Cmu05g2054 Cre05g2183 Lsi08g01479 Csa02g01942 Chy07g00136 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005157 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 0 1 1 1 1 1 1 1 1 6 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00178 Cmo_Chr05 FPKM 4.718667 3.598227 7.325036 6.541666 17.583014 18.957954 16.338854 0.0 0.080689 0.0