Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo05g00179 | ATGAATTTCAAGGATTTTGGGAATGACCCATCTGCCGGAAACGGCGGTGGAGATGGAAGACCTCCGGCCAACTATCCGTTAGCACGACAATCATCGATCTACTCCCTCACCTTCGATGAGTTTCAGAGCATGGGGAGCATAGGCAAGGATTTTGGGTCAATGAACATGGATGAGCTGTTGAAGAACATTTGGAGCGCTGAAGAAATGCAAACTATGACATCTTCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGGTAAAGAAGGGGCTGGTACTGTTGGCGGTAGTAGTGGGTATTTGCAGAGACAGGGATCTTTGACGCTGCCAAGGACACTCAGCCAGAGGAAGGTGGATGAAGTTTGGAAGGACATAATCAATGAACATGCTAGTGCTAAAGATGGGAATACTGTTGCTTCTAATTTGGAACAGAGGCAGCAAACTCTTGGGGAGATGACACTTGAAGAGTTTTTATTCAGAGCTGGAGTGGTGAGAGAAGATACTCAAGTGACTGCAAACCCCAACAATGGAGGGTTCTTTGGCAACAACACTGGTTTTGGAATTGCTTTTCAGCGGCAAGCTAAAGTTCCTGAGAGTAACAATCAGATTCCGGTTCAACCGTCAAACTTATCGTTAAATGTCAATGGAGTTCGAGCACATCCGCCGCAGCCAATATTTCCAAAGCAGCCTACTGTGACATATGGATCTCAGTTGGCTTTACCCAGTGATGGTCAGCTGGCTAGTCCAGGAATTAGAGGTGGAATTATGGGGATTGCAGATCAAGGGTTGAGCACAAATTTGATGCACGGGTCTGCACTGCAGGGTGGAAGAATGGGAGTGGTTAATTTAACAGCTGGTCCGTTACCTATTGCAACAGAATCTCCAGTGAACCAACTATCATCAGATGGGATTGGAAAGAGCAATGGCGATACCTCGTCCGTGTCTCCTGTGCCTTACGCGCTTAATGGTGGAATCAGAGGGAGGAGAAGTAATGGGACTGTCGAAAAAGTTGTCGAGAGGAGACAACGGAGAATGATAAAAAACAGAGAGTCTGCTGCGAGATCACGGGCTCGAAAGCAGGCTTACACAATGGAATTGGAAGCAGAAGTTGCAAAGCTAAAAGAGGATAACCAAGAACTCCGGAGAAAACAGGCAGAAATCATGGAAATGCAGAAAACCCGGGCGTTGGAAGTAATGGACAATCAACAAGGAATCAAGAAGCAATGCTTAAGACGAACGCAGACTGGCCCATGGTGA | 1251 | 47.0 | MNFKDFGNDPSAGNGGGDGRPPANYPLARQSSIYSLTFDEFQSMGSIGKDFGSMNMDELLKNIWSAEEMQTMTSSAAAAAAAAVGKEGAGTVGGSSGYLQRQGSLTLPRTLSQRKVDEVWKDIINEHASAKDGNTVASNLEQRQQTLGEMTLEEFLFRAGVVREDTQVTANPNNGGFFGNNTGFGIAFQRQAKVPESNNQIPVQPSNLSLNVNGVRAHPPQPIFPKQPTVTYGSQLALPSDGQLASPGIRGGIMGIADQGLSTNLMHGSALQGGRMGVVNLTAGPLPIATESPVNQLSSDGIGKSNGDTSSVSPVPYALNGGIRGRRSNGTVEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEDNQELRRKQAEIMEMQKTRALEVMDNQQGIKKQCLRRTQTGPW | 416 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 772776 | 776177 | - | CmoCh05G001790.1 | Cmo05g00179 | 382314 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo05g00179 | 416 | PANTHER | BINDING PROTEIN, PUTATIVE-RELATED | 209 | 416 | - | - | |
Cmo05g00179 | 416 | PANTHER | BINDING PROTEIN, PUTATIVE-RELATED | 5 | 180 | - | - | |
Cmo05g00179 | 416 | PANTHER | CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED | 5 | 180 | IPR043452 | GO:0003700|GO:0045893 | |
Cmo05g00179 | 416 | PANTHER | CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED | 209 | 416 | IPR043452 | GO:0003700|GO:0045893 | |
Cmo05g00179 | 416 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Cmo05g00179 | 416 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 341 | 356 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo05g00179 | 416 | Coils | Coil | 361 | 391 | - | - | |
Cmo05g00179 | 416 | MobiDBLite | consensus disorder prediction | 304 | 326 | - | - | |
Cmo05g00179 | 416 | SMART | brlzneu | 334 | 398 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo05g00179 | 416 | CDD | bZIP_plant_BZIP46 | 338 | 391 | - | - | |
Cmo05g00179 | 416 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 336 | 387 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo05g00179 | 416 | Pfam | bZIP transcription factor | 338 | 390 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo05g00179 | 416 | Gene3D | - | 336 | 392 | - | - | |
Cmo05g00179 | 416 | SUPERFAMILY | Leucine zipper domain | 338 | 387 | IPR046347 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo05g00179 | Cmo12g00499 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g00179 | Cmo-Chr5:772776 | Cmo19g00618 | Cmo-Chr19:6778771 | 1.19E-111 | dispersed | |
Cmo16g01299 | Cmo-Chr16:9248331 | Cmo05g00179 | Cmo-Chr5:772776 | 3.91E-18 | dispersed | |
Cmo11g01370 | Cmo-Chr11:9574499 | Cmo05g00179 | Cmo-Chr5:772776 | 1.73E-119 | wgd | |
Cmo12g00499 | Cmo-Chr12:3067064 | Cmo05g00179 | Cmo-Chr5:772776 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9787 | PF00170 | bZIP_1 | 1.60E-12 | CL0018 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo05g00179 | K14432 | - | csv:101223043 | 716.842 |