Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00179 ATGAATTTCAAGGATTTTGGGAATGACCCATCTGCCGGAAACGGCGGTGGAGATGGAAGACCTCCGGCCAACTATCCGTTAGCACGACAATCATCGATCTACTCCCTCACCTTCGATGAGTTTCAGAGCATGGGGAGCATAGGCAAGGATTTTGGGTCAATGAACATGGATGAGCTGTTGAAGAACATTTGGAGCGCTGAAGAAATGCAAACTATGACATCTTCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGGTAAAGAAGGGGCTGGTACTGTTGGCGGTAGTAGTGGGTATTTGCAGAGACAGGGATCTTTGACGCTGCCAAGGACACTCAGCCAGAGGAAGGTGGATGAAGTTTGGAAGGACATAATCAATGAACATGCTAGTGCTAAAGATGGGAATACTGTTGCTTCTAATTTGGAACAGAGGCAGCAAACTCTTGGGGAGATGACACTTGAAGAGTTTTTATTCAGAGCTGGAGTGGTGAGAGAAGATACTCAAGTGACTGCAAACCCCAACAATGGAGGGTTCTTTGGCAACAACACTGGTTTTGGAATTGCTTTTCAGCGGCAAGCTAAAGTTCCTGAGAGTAACAATCAGATTCCGGTTCAACCGTCAAACTTATCGTTAAATGTCAATGGAGTTCGAGCACATCCGCCGCAGCCAATATTTCCAAAGCAGCCTACTGTGACATATGGATCTCAGTTGGCTTTACCCAGTGATGGTCAGCTGGCTAGTCCAGGAATTAGAGGTGGAATTATGGGGATTGCAGATCAAGGGTTGAGCACAAATTTGATGCACGGGTCTGCACTGCAGGGTGGAAGAATGGGAGTGGTTAATTTAACAGCTGGTCCGTTACCTATTGCAACAGAATCTCCAGTGAACCAACTATCATCAGATGGGATTGGAAAGAGCAATGGCGATACCTCGTCCGTGTCTCCTGTGCCTTACGCGCTTAATGGTGGAATCAGAGGGAGGAGAAGTAATGGGACTGTCGAAAAAGTTGTCGAGAGGAGACAACGGAGAATGATAAAAAACAGAGAGTCTGCTGCGAGATCACGGGCTCGAAAGCAGGCTTACACAATGGAATTGGAAGCAGAAGTTGCAAAGCTAAAAGAGGATAACCAAGAACTCCGGAGAAAACAGGCAGAAATCATGGAAATGCAGAAAACCCGGGCGTTGGAAGTAATGGACAATCAACAAGGAATCAAGAAGCAATGCTTAAGACGAACGCAGACTGGCCCATGGTGA 1251 47.0 MNFKDFGNDPSAGNGGGDGRPPANYPLARQSSIYSLTFDEFQSMGSIGKDFGSMNMDELLKNIWSAEEMQTMTSSAAAAAAAAVGKEGAGTVGGSSGYLQRQGSLTLPRTLSQRKVDEVWKDIINEHASAKDGNTVASNLEQRQQTLGEMTLEEFLFRAGVVREDTQVTANPNNGGFFGNNTGFGIAFQRQAKVPESNNQIPVQPSNLSLNVNGVRAHPPQPIFPKQPTVTYGSQLALPSDGQLASPGIRGGIMGIADQGLSTNLMHGSALQGGRMGVVNLTAGPLPIATESPVNQLSSDGIGKSNGDTSSVSPVPYALNGGIRGRRSNGTVEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEDNQELRRKQAEIMEMQKTRALEVMDNQQGIKKQCLRRTQTGPW 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 772776 776177 - CmoCh05G001790.1 Cmo05g00179 382314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00179 416 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 209 416 - -
Cmo05g00179 416 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 5 180 - -
Cmo05g00179 416 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 5 180 IPR043452 GO:0003700|GO:0045893
Cmo05g00179 416 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 209 416 IPR043452 GO:0003700|GO:0045893
Cmo05g00179 416 MobiDBLite consensus disorder prediction 1 26 - -
Cmo05g00179 416 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 341 356 IPR004827 GO:0003700|GO:0006355
Cmo05g00179 416 Coils Coil 361 391 - -
Cmo05g00179 416 MobiDBLite consensus disorder prediction 304 326 - -
Cmo05g00179 416 SMART brlzneu 334 398 IPR004827 GO:0003700|GO:0006355
Cmo05g00179 416 CDD bZIP_plant_BZIP46 338 391 - -
Cmo05g00179 416 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 336 387 IPR004827 GO:0003700|GO:0006355
Cmo05g00179 416 Pfam bZIP transcription factor 338 390 IPR004827 GO:0003700|GO:0006355
Cmo05g00179 416 Gene3D - 336 392 - -
Cmo05g00179 416 SUPERFAMILY Leucine zipper domain 338 387 IPR046347 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00179 Cmo12g00499 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00179 Cmo-Chr5:772776 Cmo19g00618 Cmo-Chr19:6778771 1.19E-111 dispersed
Cmo16g01299 Cmo-Chr16:9248331 Cmo05g00179 Cmo-Chr5:772776 3.91E-18 dispersed
Cmo11g01370 Cmo-Chr11:9574499 Cmo05g00179 Cmo-Chr5:772776 1.73E-119 wgd
Cmo12g00499 Cmo-Chr12:3067064 Cmo05g00179 Cmo-Chr5:772776 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9787 PF00170 bZIP_1 1.60E-12 CL0018 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00179 K14432 - csv:101223043 716.842