Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00215 ATGGACATCAAAGAAGCAATCAGAAACCATGGCGACGTCGCCATGGTCATCACCAAGCGCATTCTCCAACACGACGAAGCCAAGGGTTCCAACGTTGTGATATCCCCCTTGTCAATCTACGTGCTTCTCAGCCTTGTCGCTGCCGGCTCCAAGGGCCCCCCGCTGGATCAACTTCTATCCTTCCTCAAATCAAACTCCGTCGACAACCTCAACGCCTTCGCTTCTCACATCATAGACAAGGTCTTCGCCGATGCCTCTTCCTGCGGCGGACCTCGCCTCGCATTTGCCAACGGCGTTTGGATCGATCAATCAATTTCTCTCAAGCCTTCTTTCCAACAGGTTGTCGACAAATATTACAAGGCCATGCTCAGTCAAGTCAATTTCAAACAGGCTGATAAAGTGATCTCTTTAGTGAACTCATGGGTTGAAAAAAACACTAATGGACTTATCAAAGAGATTCTTCCCCCTGGATCAGTGGACGGTTTCACTAGGCTCATCCTTGCGAACGCACTCTACTTCAAAGGGGCATGGGACAAGAAATTTGATGCTTCGAAAACAGTGAAGCGTGATTTCTACCTTGTTGATGGGAGCTCAGTTGAAGCGCCCTTTATGACCGACAAGGAGGACCAATATGTAGCTGTGTTCGATGGGTTTAAGGTTCTTGCACTGCCGTACAGTCAAGGTTCTGACCCACGTCGTTTTTCTATGTACTTCTTTCTCCCAGATAGCAAGGATGGACTGGGAAGTTTGATTGAAAAGTTAGATTCTGAGCCTGGGTTCATCGACCGCCACATTCCACGTAGAAAACATGAGCTGGGGAAATTTATGATTCCAAAGTTCAAAATTTCCTTTGGGATTGAAGTTTCCGATGTCTTAAAGAAGCTAGGATTGGTGCTGCCTTTCTATGAAGGAGGGTTGCTAGAAATGGTGGAGCCCCCAATGGCTCGAAACCTTAGTATTTCTAAAATATTCCACAAGGCGTTTATTGAGGTTAATGAAGAAGGCACCGAAGCTGCAGCTTCTTCAGCTGCTGTTATACAATATATGAGCGCGCCTATAGGTTTGATAGAGTTCGTTGCCAATCACCCGTTCTTGTACTTGATTAGGGAAGATAAGTCAGGAACTTTACTTTTTATTGGGCAGGTGTTAAACCCTCTTGAAGATTGA 1167 46.02 MDIKEAIRNHGDVAMVITKRILQHDEAKGSNVVISPLSIYVLLSLVAAGSKGPPLDQLLSFLKSNSVDNLNAFASHIIDKVFADASSCGGPRLAFANGVWIDQSISLKPSFQQVVDKYYKAMLSQVNFKQADKVISLVNSWVEKNTNGLIKEILPPGSVDGFTRLILANALYFKGAWDKKFDASKTVKRDFYLVDGSSVEAPFMTDKEDQYVAVFDGFKVLALPYSQGSDPRRFSMYFFLPDSKDGLGSLIEKLDSEPGFIDRHIPRRKHELGKFMIPKFKISFGIEVSDVLKKLGLVLPFYEGGLLEMVEPPMARNLSISKIFHKAFIEVNEEGTEAAASSAAVIQYMSAPIGLIEFVANHPFLYLIREDKSGTLLFIGQVLNPLED 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 925317 926868 - CmoCh05G002150.1 Cmo05g00215 382350

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00215 388 Pfam Serpin (serine protease inhibitor) 12 385 IPR023796 -
Cmo05g00215 388 PANTHER SERPIN-ZX-LIKE 12 386 - -
Cmo05g00215 388 CDD serpinP_plants 8 385 - -
Cmo05g00215 388 SUPERFAMILY Serpins 11 385 IPR036186 -
Cmo05g00215 388 ProSitePatterns Serpins signature. 358 368 IPR023795 -
Cmo05g00215 388 Gene3D - 177 380 IPR042185 -
Cmo05g00215 388 Gene3D Antithrombin, subunit I, domain 2 29 333 IPR042178 -
Cmo05g00215 388 PANTHER SERINE PROTEASE INHIBITOR, SERPIN 12 386 IPR000215 GO:0004867|GO:0005615
Cmo05g00215 388 SMART serpin2 15 385 IPR023796 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00215 K13963 SERPINB; serpin B - csv:101202809 533.102
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00206 Cmo-Chr5:900455 Cmo05g00215 Cmo-Chr5:925317 0 dispersed
Cmo05g00212 Cmo-Chr5:916696 Cmo05g00215 Cmo-Chr5:925317 2.48E-38 dispersed
Cmo05g00213 Cmo-Chr5:917578 Cmo05g00215 Cmo-Chr5:925317 0 dispersed
Cmo05g00214 Cmo-Chr5:922273 Cmo05g00215 Cmo-Chr5:925317 4.60E-74 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g831 . . . . . . . . Cmo05g00215 . . . . . Sed08g1817 . . Bhi04g00301 Tan02g1904 Cmetu03g1500 . Hepe10g0696 . Lcy13g2026 Cla08g01534 Cam08g2027 Cec08g1603 Cco08g1738 Clacu08g1716 . Cre08g1499 . . Cone17ag1302 . . Csa04g02371 . Cme03g02000 Blo17g00830 . Bda08g01319 . . Bpe05g00068 . . . . . . Cma05g00209 . . Cpe11g00174 . . . . . . . . . . . . . . . Lsi08g01436 Csa02g02005 Chy07g00100 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000825 2 1 6 2 1 2 0 2 2 4 1 2 3 4 4 7 2 3 2 2 4 1 2 5 5 4 4 7 5 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00215 Cmo_Chr05 FPKM 32.238995 34.593063 4.689425 2.893333 0.567369 0.198555 0.0 16.436842 18.605474 19.786539