Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00220 ATGTTTACCTCCACCCATATGATCACCAACACCACGGCACCGCCCTTGCCGGACCTTTCCTTGCAGATAAGCCCACCCTCTGATTCCGGCAGCAGCGGCAGCGATCTGACCCATGAGAATGCTGCGTTTCTTCTTCCTCCCAAAACCCATTTCAAGGGAGATGCCAAAATGGGCTTTGGGATTAAAAGAAGAATTAGAGCTCCAAGAATGAGATGGACCACCACTCTTCATGCCCATTTCGTCCACGCTGTTCAGCTCCTTGGCGGCCATGACAGGGCAACACCAAAATCTGTACTGGAGCTGATGAATGTCAAAGATTTAACCCTAGCTCATGTAAAAAGCCATTTACAGAATTGA 357 49.02 MFTSTHMITNTTAPPLPDLSLQISPPSDSGSSGSDLTHENAAFLLPPKTHFKGDAKMGFGIKRRIRAPRMRWTTTLHAHFVHAVQLLGGHDRATPKSVLELMNVKDLTLAHVKSHLQN 118
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 937944 939332 + CmoCh05G002200.1 Cmo05g00220 382355
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00220 118 Gene3D - 67 118 - -
Cmo05g00220 118 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 28 117 IPR044847 GO:0000976|GO:0006355|GO:0010158
Cmo05g00220 118 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 68 117 IPR006447 GO:0003677
Cmo05g00220 118 PANTHER TRANSCRIPTION FACTOR KAN4-RELATED 28 117 - -
Cmo05g00220 118 Pfam Myb-like DNA-binding domain 69 118 IPR001005 -
Cmo05g00220 118 MobiDBLite consensus disorder prediction 1 38 - -
Cmo05g00220 118 MobiDBLite consensus disorder prediction 1 39 - -
Cmo05g00220 118 SUPERFAMILY Homeodomain-like 65 117 IPR009057 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cmo05g00220 Cmo09g00190 CCT
Cmo05g00220 Cmo12g00449 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00220 Cmo-Chr5:937944 Cmo04g02386 Cmo-Chr4:17784904 2.71E-31 dispersed
Cmo12g00449 Cmo-Chr12:2750288 Cmo05g00220 Cmo-Chr5:937944 2.65E-38 wgd
Cmo05g00220 Cmo-Chr5:937944 Cmo09g00190 Cmo-Chr9:854431 1.38E-37 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9790 PF00249 Myb_DNA-binding 9.90E-06 CL0123 Cmo TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00220 - - cpep:111799190 151.754