Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo05g00220 | ATGTTTACCTCCACCCATATGATCACCAACACCACGGCACCGCCCTTGCCGGACCTTTCCTTGCAGATAAGCCCACCCTCTGATTCCGGCAGCAGCGGCAGCGATCTGACCCATGAGAATGCTGCGTTTCTTCTTCCTCCCAAAACCCATTTCAAGGGAGATGCCAAAATGGGCTTTGGGATTAAAAGAAGAATTAGAGCTCCAAGAATGAGATGGACCACCACTCTTCATGCCCATTTCGTCCACGCTGTTCAGCTCCTTGGCGGCCATGACAGGGCAACACCAAAATCTGTACTGGAGCTGATGAATGTCAAAGATTTAACCCTAGCTCATGTAAAAAGCCATTTACAGAATTGA | 357 | 49.02 | MFTSTHMITNTTAPPLPDLSLQISPPSDSGSSGSDLTHENAAFLLPPKTHFKGDAKMGFGIKRRIRAPRMRWTTTLHAHFVHAVQLLGGHDRATPKSVLELMNVKDLTLAHVKSHLQN | 118 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 937944 | 939332 | + | CmoCh05G002200.1 | Cmo05g00220 | 382355 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo05g00220 | 118 | Gene3D | - | 67 | 118 | - | - | |
Cmo05g00220 | 118 | PANTHER | TRANSCRIPTION FACTOR KAN2-RELATED | 28 | 117 | IPR044847 | GO:0000976|GO:0006355|GO:0010158 | |
Cmo05g00220 | 118 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 68 | 117 | IPR006447 | GO:0003677 | |
Cmo05g00220 | 118 | PANTHER | TRANSCRIPTION FACTOR KAN4-RELATED | 28 | 117 | - | - | |
Cmo05g00220 | 118 | Pfam | Myb-like DNA-binding domain | 69 | 118 | IPR001005 | - | |
Cmo05g00220 | 118 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
Cmo05g00220 | 118 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
Cmo05g00220 | 118 | SUPERFAMILY | Homeodomain-like | 65 | 117 | IPR009057 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo05g00220 | Cmo09g00190 | CCT | |
Cmo05g00220 | Cmo12g00449 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g00220 | Cmo-Chr5:937944 | Cmo04g02386 | Cmo-Chr4:17784904 | 2.71E-31 | dispersed | |
Cmo12g00449 | Cmo-Chr12:2750288 | Cmo05g00220 | Cmo-Chr5:937944 | 2.65E-38 | wgd | |
Cmo05g00220 | Cmo-Chr5:937944 | Cmo09g00190 | Cmo-Chr9:854431 | 1.38E-37 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9790 | PF00249 | Myb_DNA-binding | 9.90E-06 | CL0123 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo05g00220 | - | - | cpep:111799190 | 151.754 |