Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00222 ATGGCGGCTATGTCACCTCACCCTTGTTCTGTCGAGAACAACATCGCTGGAGCTCAAGAGGAGGCGGAGATGGAGATGGAGACGGAGGCAGCGGCGGTGGGCCCAGATGTGACGAGGCATATTATGGTGAAGTCTTCCCGCTCCACCCAAGTCAGTTTGGAGAAAGCGGTGGTGCTGCGACGGATCCGGCATCGGAAGCGTGTTAACAAGTTCCAGGCGGTGGTTGGAGCCTTGTTCAGCTCACCGTTCGCCGACAAAGCCGACGAGACACAGGCTGAATGTTCAAAATCATGCAGTCCCAACCACACCCCATACGATTTTCCCTACCCATTCGGCTTCTCCGCCGGCTGCGCAATCCGCTTGGACTGCAATCACGACGGCGCCGCCACCATCGGGGAATTCCCTGTCCAATTAATCAACTCCGACCACATCAAAGTCGTCATCAAAGCCAAATGCAACCGCCGTTTGCACACAATCCGCCAATTCTTCAGCCCCCACTACGCCCCAACGGCCAACAACGCCATTCTTTTACAAAACTGTTCGTCTCCGATTTCGACTTGCCTTTTACCCACCACGATGGTTCAGACCAAATTCGAATCCCCCGATTGCTCTGTTAATCGCACTAGCATAAGCTGCTACACCCAAAACAACACCGCTTCCGCCGCTTTCTTGGACTTCAAAAACCTCACCGGAACCAACTGCGATTACCTTCTCTCGTCCATTTCCGCGGAGGCGCTCAACAGCAACACCTCTGCTGGAATTTCTCTGGAGATTCAGACGGTGGATCTGGGTTGGTGGCTGCAGGGGCCCTGCCGCCAGTCCTGCCATAAAGATGCTAACTGTACGGAGCTTATATCGCCGAGTGACGGGAAGCTATCTCATCGGTGCCGCTGCCGGGAAGGGTTGGTCGGCGATGGGTATTTGACCGGCACTGGCTGCCGGAAAGCTTCAAATTGCTATGCCACTAAGTACACTCTCGCCCAATGCGGAACATCAACAACTGCCACAACAACCGCCGTCCTCGTCGGAACTATAGTCGCCGGAGCCTTCCTCCTCGTTACTCTCCTTTTATTCTGCTGCTTCATCCGCCGTCGTTCCAATCTCAAATCTATTCACCTCAACAAAATCACCAAACGCCGCCTCGCTGAAGCCACAACCGGCGCCGGCGTATCCACCATCCACCTCTACACCTACAAAGAGATTCTAAAAGCTACCCATAACTTCTCTGAGGACTACCGCCTTGGCGCCGGCGCATACGCCTCCGTCTTCGTCGGGAAATTACGCGGCGAATGGGTCGCAATTAAACGCCTAAAAAATCGAGACCCCGACACAATCCAACAAGTTTTAAACGAAATCAACCTCATCTCCTCTGTCAGCCACCCTAACCTCGTCCGCCTCCTTGGCTGCTCCATGGAATCAGGCGACCAAATCCTCGTCTACGAATTCATGCCCAACGGCACTCTGTTCCAACATTTACAGAAACAGAGGGGCACCGGCCTCCCCTGGCTTGTCCGCCTCAATATCGCCGTCGAAACCGCTAATGCAATCGCTCATCTCCATTCTGCAATTAACCATCCGATCTTCCACAGAGACATTAAATCCAGTAACATATTACTTGATCATAATCTCAAATCCAAAGTGGCGGATTTCGGGCTTTCGAGATTGGGAATGGCCGAAATTTCCCACATTTCCACGGCGCCTCAAGGAACACCGGGATATCTCGATCCGCAGTACCATCAGGATTTTCATCTCTCCGACAAGAGCGACGTGTACAGCTTCGGCGTAGTCCTTGTCGAATTGATCACCGCCATGAAAGTGGTGGATTTCTGCCGGCCGAAAGACGAGGTCAATTTAGCCGGTCTGGCAGTCGATCGGATCGGGAATGGGCGGCTGAGAGAAATTGTTGACCCGTTAATGGAGATGGAGTTAGACGAACGGGGAATTTCGTCGGTGGAGAAGGTGGGGGAGGTGGCGTTCAGATGCCTGGCGTTTAATCGGGATGTAAGACCGTCGATGGTAGAGGTGGCGGCGGAGCTGGAGGAGATACGGCGGAGCAGGTGGGATGAAGGGGGAGTGAAGTGTAAGGAAATAGTTGAAAGTGGAAGCTGGAAGTCTAGCCATGGAGGAGGGGATTACTTTTCCAGAGGCTCAGTGGAAGATTCATGGCAGAGTGAACAGAGCTCACCGTCTTCCAATAGCTTGAATTTATTAGCTTGTGGTTGA 2223 53.17 MAAMSPHPCSVENNIAGAQEEAEMEMETEAAAVGPDVTRHIMVKSSRSTQVSLEKAVVLRRIRHRKRVNKFQAVVGALFSSPFADKADETQAECSKSCSPNHTPYDFPYPFGFSAGCAIRLDCNHDGAATIGEFPVQLINSDHIKVVIKAKCNRRLHTIRQFFSPHYAPTANNAILLQNCSSPISTCLLPTTMVQTKFESPDCSVNRTSISCYTQNNTASAAFLDFKNLTGTNCDYLLSSISAEALNSNTSAGISLEIQTVDLGWWLQGPCRQSCHKDANCTELISPSDGKLSHRCRCREGLVGDGYLTGTGCRKASNCYATKYTLAQCGTSTTATTTAVLVGTIVAGAFLLVTLLLFCCFIRRRSNLKSIHLNKITKRRLAEATTGAGVSTIHLYTYKEILKATHNFSEDYRLGAGAYASVFVGKLRGEWVAIKRLKNRDPDTIQQVLNEINLISSVSHPNLVRLLGCSMESGDQILVYEFMPNGTLFQHLQKQRGTGLPWLVRLNIAVETANAIAHLHSAINHPIFHRDIKSSNILLDHNLKSKVADFGLSRLGMAEISHISTAPQGTPGYLDPQYHQDFHLSDKSDVYSFGVVLVELITAMKVVDFCRPKDEVNLAGLAVDRIGNGRLREIVDPLMEMELDERGISSVEKVGEVAFRCLAFNRDVRPSMVEVAAELEEIRRSRWDEGGVKCKEIVESGSWKSSHGGGDYFSRGSVEDSWQSEQSSPSSNSLNLLACG 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 946717 951561 + CmoCh05G002220.1 Cmo05g00222 382357

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00222 740 SUPERFAMILY Protein kinase-like (PK-like) 390 680 IPR011009 -
Cmo05g00222 740 Pfam Protein kinase domain 410 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g00222 740 SMART serkin_6 408 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g00222 740 Gene3D Transferase(Phosphotransferase) domain 1 483 697 - -
Cmo05g00222 740 ProSiteProfiles Protein kinase domain profile. 408 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g00222 740 ProSitePatterns Protein kinases ATP-binding region signature. 414 435 IPR017441 GO:0005524
Cmo05g00222 740 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 88 698 IPR045274 GO:0007166
Cmo05g00222 740 MobiDBLite consensus disorder prediction 716 740 - -
Cmo05g00222 740 Gene3D Laminin 272 309 - -
Cmo05g00222 740 Gene3D Phosphorylase Kinase; domain 1 393 482 - -
Cmo05g00222 740 ProSitePatterns Serine/Threonine protein kinases active-site signature. 527 539 IPR008271 GO:0004672|GO:0006468
Cmo05g00222 740 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 14 88 698 - -
Cmo05g00222 740 MobiDBLite consensus disorder prediction 717 740 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00222 - - - csv:101218893 1093.95
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00222 Cmo12g00445 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00222 Cmo-Chr5:946717 Cmo14g01200 Cmo-Chr14:10170525 7.27E-89 dispersed
Cmo12g00447 Cmo-Chr12:2741820 Cmo05g00222 Cmo-Chr5:946717 6.75E-23 transposed
Cmo12g00445 Cmo-Chr12:2737861 Cmo05g00222 Cmo-Chr5:946717 0 wgd
Cmo05g00222 Cmo-Chr5:946717 Cmo07g00751 Cmo-Chr7:3406838 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g862 . . . . . . . . Cmo05g00222 Cmo12g00445 . . . Car12g00472 . . Cpe07g00450 Bhi04g00293 . . . . . Lcy13g2018 Cla08g01525 . . . . . . Cone4ag1879 Cone7ag1788 Cone17ag1312 . . . . Cme03g01991 . Blo18g00827 . Bda01g01485 Bpe02g01680 . Bma01g00774 . . . . Cma12g00502 Cma05g00216 Car05g00176 . Cpe11g00178 . . . . . . . . . . . . . . . Lsi08g01427 Csa02g02013 Chy03g01496 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001068 3 4 2 2 3 2 4 2 2 2 2 2 4 2 1 4 2 6 4 2 2 2 1 2 1 2 2 2 2 1 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74342 PF00069 Pkinase 3.00E-39 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00222 Cmo_Chr05 FPKM 3.314274 3.260057 1.870238 2.25139 4.151971 4.260473 4.685546 5.951694 7.51876 7.777008