Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00225 ATGTTCGAACCACCACCACCACCTCCGCCGCCGCCCTCCCTTCTCTTCCTTTTCTTCTTCTTCTTCTTCATTTCATCCATAACCGGCGCCGATGCCATTGCTGTATTCAAGGAGGCCCCCCAATTCTATAACTCCCCGGACTGCCCCTTGGTCGTCACTGGCGAGGAAAACGGTAACCGACTTTGCTCATACGACGGCATCCACGTGGCGATGACATTGGACACCGCATACATCCGAGGGTCCATGGCGGCCGTCCTCTCCGTTCTGCAACATTCCACCTGCCCCCAAAATGTAATATTCCATTTCGTTTCCTCTGCCTCTGCAAACGCGTCGGATCTACGCGCCACCATTTCCTCCTCCTTCCCATACCTGAAATTCCAAATCTACCCGTTCGACGACGACGCCGTGTCTCGTCTGATCTCCACCTCCATCCGATCGGCTCTGGATTGCCCTTTGAATTACGCGCGTAGTTACTTGGCCGACCTCCTTCCTCTCTGTGTCCGTCGTGTCGTCTATCTCGATTCCGATCTAATCCTCGTCGACGACATCGCTAATCTCGCTAATACCCCTCTAAACGATGCCGTATTAGCCGCCCCGGAGTACTGCAACGCCAATTTCACCTACTATTTCACTCCCACATTCTGGTCCAATCCCTCTCTGTCTCTCACCTTCGCCAATCGCAACCCCTGTTATTTCAACACCGGCGTCATGGTCATCGACCTCGCCCGGTGGCGCCTCGGCGATTTCACCTCAAAAATCGAGGAATGGATGGAGCTTCAGAAGCGGATAAGGATCTACGAGCTGGGATCTCTGCCGCCATTCATGCTCGTTTTCGCCGGAAACATTGCCCCCGTGGACCACCGCTGGAACCAACACGGTCTCGGCGGTGACAATTTCCGGGGACTCTGTCGAGATCTACACCCCGGTCCAGTGAGCCTTCTACATTGGAGCGGAAAGGGGAAGCCGTGGGCCCGGCTCGATGCGAACCGGCCGTGTCCATTGGATGCTTTGTGGGTCCCTTATGATCTGTTGCAAACTCCATTTTCGTTGGAGTCTTGA 1059 54.96 MFEPPPPPPPPPSLLFLFFFFFFISSITGADAIAVFKEAPQFYNSPDCPLVVTGEENGNRLCSYDGIHVAMTLDTAYIRGSMAAVLSVLQHSTCPQNVIFHFVSSASANASDLRATISSSFPYLKFQIYPFDDDAVSRLISTSIRSALDCPLNYARSYLADLLPLCVRRVVYLDSDLILVDDIANLANTPLNDAVLAAPEYCNANFTYYFTPTFWSNPSLSLTFANRNPCYFNTGVMVIDLARWRLGDFTSKIEEWMELQKRIRIYELGSLPPFMLVFAGNIAPVDHRWNQHGLGGDNFRGLCRDLHPGPVSLLHWSGKGKPWARLDANRPCPLDALWVPYDLLQTPFSLES 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 964752 965810 - CmoCh05G002250.1 Cmo05g00225 382360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00225 352 PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 17 352 - -
Cmo05g00225 352 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 68 332 IPR029044 -
Cmo05g00225 352 Pfam Glycosyl transferase family 8 68 325 IPR002495 GO:0016757
Cmo05g00225 352 SUPERFAMILY Nucleotide-diphospho-sugar transferases 67 343 IPR029044 -
Cmo05g00225 352 PANTHER GALACTURONOSYLTRANSFERASE-LIKE 1-RELATED 17 352 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01950 Cmo05g00225 CCT
Cmo05g00225 Cmo09g00172 CCT
Cmo01g01950 Cmo05g00225 ECH
Cmo05g00225 Cmo09g00172 ECH
Cmo05g00225 Cmo12g00442 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00225 Cmo-Chr5:964752 Cmo17g01030 Cmo-Chr17:8771641 4.39E-137 dispersed
Cmo17g01129 Cmo-Chr17:9207168 Cmo05g00225 Cmo-Chr5:964752 1.50E-140 dispersed
Cmo01g01950 Cmo-Chr1:13881139 Cmo05g00225 Cmo-Chr5:964752 0 wgd
Cmo12g00442 Cmo-Chr12:2713840 Cmo05g00225 Cmo-Chr5:964752 0 wgd
Cmo05g00225 Cmo-Chr5:964752 Cmo07g00774 Cmo-Chr7:3499573 0 wgd
Cmo05g00225 Cmo-Chr5:964752 Cmo09g00172 Cmo-Chr9:775314 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00225 K20893 - csv:101218422 636.721