Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00227 ATGGCGAGCGGGTTTGGGGAATCGACAAGTAGGCAACCCCAAGGCCCTTCTTATTCCGATAACAATGGTGATGCTAGTAATTTTGAATGCAATATTTGCCTGGATTTAGCTCAGGATCCTATTGTAACCCTATGCGGTCATCTTTTCTGTTGGCCATGCCTTTACAAGTGGCTGCACATTCATTCCCATCCCCAGGAGTGTCCAGTTTGCAAGGCTCTCATAGAAGAACAAAAATTGGTTCCCTTATATGGTAGGGGAAAGACATCGACCGACCCGAGATCGAAAAGTATTCCTGGAATCAATATTCCTAATCGTCCTTCTGGACAGAGACCTGAAGCAGCAGGCCCTCCCCCAGAACCAAATCCTTTTCCCCACAATGGGTTTGGATTCATGGGAGGTCTTGGTGGGTTTGCCCCAATGGCATCGACGAGGTTTGGCAATTTCACTTTGTCTGCGGCTTTTGGTGGTCTTGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGTGCTAACGTTCCATATGGTTTTCCTAACATGTTTCATGGTAGCCATGGTCACGCCCATGGCTACTATCACCATCTCCGTCAAGGTCAGCAAGATTATTACCTGAAGCGGCTGCTTTTGTTTATTGGTTTCTGTGTTCTTCTTGCCCTAATCTGGCAATAG 693 46.61 MASGFGESTSRQPQGPSYSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKALIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPSGQRPEAAGPPPEPNPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGANVPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFIGFCVLLALIWQ 230
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 968231 969700 - CmoCh05G002270.1 Cmo05g00227 382362
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00227 230 MobiDBLite consensus disorder prediction 89 103 - -
Cmo05g00227 230 Pfam Zinc finger, C3HC4 type (RING finger) 29 70 - -
Cmo05g00227 230 PANTHER OS12G0636000 PROTEIN 2 230 - -
Cmo05g00227 230 MobiDBLite consensus disorder prediction 1 20 - -
Cmo05g00227 230 CDD RING-HC_AtRMA_like 28 72 - -
Cmo05g00227 230 MobiDBLite consensus disorder prediction 84 122 - -
Cmo05g00227 230 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Cmo05g00227 230 ProSiteProfiles Zinc finger RING-type profile. 30 71 IPR001841 -
Cmo05g00227 230 SUPERFAMILY RING/U-box 26 83 - -
Cmo05g00227 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 230 IPR045103 GO:0005783|GO:0006511|GO:0061630
Cmo05g00227 230 SMART ring_2 30 70 IPR001841 -
Cmo05g00227 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 84 IPR013083 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01032 Cmo-Chr3:7732278 Cmo05g00227 Cmo-Chr5:968231 8.28E-78 dispersed
Cmo05g00227 Cmo-Chr5:968231 Cmo12g00442 Cmo-Chr12:2713840 1.65E-143 dispersed
Cmo13g00667 Cmo-Chr13:6988700 Cmo05g00227 Cmo-Chr5:968231 6.73E-27 dispersed
Cmo05g00227 Cmo-Chr5:968231 Cmo07g00775 Cmo-Chr7:3503464 6.87E-82 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00227 K10666 - csv:101221027 426.017