Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo05g00227 | ATGGCGAGCGGGTTTGGGGAATCGACAAGTAGGCAACCCCAAGGCCCTTCTTATTCCGATAACAATGGTGATGCTAGTAATTTTGAATGCAATATTTGCCTGGATTTAGCTCAGGATCCTATTGTAACCCTATGCGGTCATCTTTTCTGTTGGCCATGCCTTTACAAGTGGCTGCACATTCATTCCCATCCCCAGGAGTGTCCAGTTTGCAAGGCTCTCATAGAAGAACAAAAATTGGTTCCCTTATATGGTAGGGGAAAGACATCGACCGACCCGAGATCGAAAAGTATTCCTGGAATCAATATTCCTAATCGTCCTTCTGGACAGAGACCTGAAGCAGCAGGCCCTCCCCCAGAACCAAATCCTTTTCCCCACAATGGGTTTGGATTCATGGGAGGTCTTGGTGGGTTTGCCCCAATGGCATCGACGAGGTTTGGCAATTTCACTTTGTCTGCGGCTTTTGGTGGTCTTGTCCCATCTTTATTCAACTTTCAGATGCATGGATATGCAGATCCAAGCATGTATGGTGCAGGTGCTAACGTTCCATATGGTTTTCCTAACATGTTTCATGGTAGCCATGGTCACGCCCATGGCTACTATCACCATCTCCGTCAAGGTCAGCAAGATTATTACCTGAAGCGGCTGCTTTTGTTTATTGGTTTCTGTGTTCTTCTTGCCCTAATCTGGCAATAG | 693 | 46.61 | MASGFGESTSRQPQGPSYSDNNGDASNFECNICLDLAQDPIVTLCGHLFCWPCLYKWLHIHSHPQECPVCKALIEEQKLVPLYGRGKTSTDPRSKSIPGINIPNRPSGQRPEAAGPPPEPNPFPHNGFGFMGGLGGFAPMASTRFGNFTLSAAFGGLVPSLFNFQMHGYADPSMYGAGANVPYGFPNMFHGSHGHAHGYYHHLRQGQQDYYLKRLLLFIGFCVLLALIWQ | 230 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 968231 | 969700 | - | CmoCh05G002270.1 | Cmo05g00227 | 382362 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo05g00227 | 230 | MobiDBLite | consensus disorder prediction | 89 | 103 | - | - | |
| Cmo05g00227 | 230 | Pfam | Zinc finger, C3HC4 type (RING finger) | 29 | 70 | - | - | |
| Cmo05g00227 | 230 | PANTHER | OS12G0636000 PROTEIN | 2 | 230 | - | - | |
| Cmo05g00227 | 230 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Cmo05g00227 | 230 | CDD | RING-HC_AtRMA_like | 28 | 72 | - | - | |
| Cmo05g00227 | 230 | MobiDBLite | consensus disorder prediction | 84 | 122 | - | - | |
| Cmo05g00227 | 230 | ProSitePatterns | Zinc finger RING-type signature. | 45 | 54 | IPR017907 | - | |
| Cmo05g00227 | 230 | ProSiteProfiles | Zinc finger RING-type profile. | 30 | 71 | IPR001841 | - | |
| Cmo05g00227 | 230 | SUPERFAMILY | RING/U-box | 26 | 83 | - | - | |
| Cmo05g00227 | 230 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 2 | 230 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
| Cmo05g00227 | 230 | SMART | ring_2 | 30 | 70 | IPR001841 | - | |
| Cmo05g00227 | 230 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 17 | 84 | IPR013083 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo03g01032 | Cmo-Chr3:7732278 | Cmo05g00227 | Cmo-Chr5:968231 | 8.28E-78 | dispersed | |
| Cmo05g00227 | Cmo-Chr5:968231 | Cmo12g00442 | Cmo-Chr12:2713840 | 1.65E-143 | dispersed | |
| Cmo13g00667 | Cmo-Chr13:6988700 | Cmo05g00227 | Cmo-Chr5:968231 | 6.73E-27 | dispersed | |
| Cmo05g00227 | Cmo-Chr5:968231 | Cmo07g00775 | Cmo-Chr7:3503464 | 6.87E-82 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo05g00227 | K10666 | - | csv:101221027 | 426.017 |