Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00241 ATGGCCGGCCGCTTCGACTTTGGTTCTCGCCCCAATCTCTCTGTCTCCAGTCCGCTCCATGCTGCCAATGATGTTCAGGGGTCTGAAAATCCAATTCCTCTTTCACCACAGTGGCTTCTGCCTAAACCAGGGGAGAGTAAGCATGGAATGGGAACTGGGGAAAACAATTTCAGTCATCAACCTGTTTATGGAAACCGCATGGACACGATGAAGGGATCAGAGAATTCTGAGGATATGAATGAAATACAAAAGAAAAAAGAAATTTTTAGGCCATCCTTGACTGATTCTGAAATTGGTAGGCGTGACCGTTGGCATGACGAGGAAAGAGAAAATAGTTCTTCAGTGCGTAAGGATCGTTGGAGGGATGGTGAGAAAGAGATAGGTGATGGTCGTAAGATGGATCGTTGGAATGAAGACTCATCCACAAGAGTCTTTAGAGAATCTCGCCGAGGCCCATCGGAACGCTGGTCTGATTCAAGCAATCGGGATAATGTTCATTATGATCAACGACGTGAGAGCAAATGGAATACACGTTGGGGCCCTGATGATAAGGAAACTGAAGGCTTTCGTGAGAAGCGGGTGGACTCTGGAAGAGATGGTGATTTGCACCTTGACAAAAATTTCTCTCATGTGTCCAATTATGGGAAAAATGACAGGGATGGAGATCATTATCGCCCATGGAGGTCTAGTTCCTCTCAGGGTCGAGGTAAGGGAGAACCCCCTCATCATCAAACCCAAACTCCAATCAAACAAGTTCCTGCATTTTCCCATCGTGGACGTGCAGACAACACACCTCCTACCTTTTCTTTAGGTCGTGGAATCATCAGTTCTGGTGTAAATCCTCCCAATAGTATTTATTCATCTCCACATTCTCTTGGAGCTTCCTCCGAGAAATCTGGAAGAGAGCCTTACTACTACAAATATAGCAGGACAAAGTTGCTTGATGTTTTCAGGACTACCAGTCTGACATCACAGCAAACTTTAAAAGATGGATTTGTGCCCGTGCCTACTCTTACGCTGGATGAACCGTTGGAGCCTCTTGCTCTTTGTGTGCCAACTACTGAAGAAATGGCTTTCTTGAAAGGGATTGATAAAGGGGAAATTGTCAGTAGTGGTGCACCTCAGGTGTCAAAGGATGGTCGAAACTCATCAGAATTTATGCAGACTAGACGAACAAAACTTGGTGTTTCACCTTCTCTAGGCAGTAGAGAGGATTTACCTCATGGCTTTGATGATTGCAATGATGATAAGGATGATAGCACCACTAAACCTGGTCACACAAACTATTCAGAGGTCACTACCGAGAGGCAGTTGCCATATCATAGGCCACTGGCACATGCTAGTAGCACCTTCAAATCTGAAGCTTTCAGAGAAGATGACAATGCTATGAGAAAAGCAGATGAGGGGCCTGTCAGTAGGGAATCTAGTGTTAAGGGGGGTACCAATGTTCAACACGGCCGTACATGGGATGCCTCCTCATCACTTGAGCAACTCCTGAATACATCCTTACCTGATTGGAGAGACAATCCTAATAATATCAACTCAGGAACTCCTGACAAGGGACTACAGTCTTCAAAGAATCTTAATGATGGGTGGGGAAGTAACTCAGTCACTCCATCTTATCCGAAGGAGAATCCCAAATGGCATACTGGGGACGAATCCATCCTTAGAAGGCAGCTTTCAGGGATTTTGGACAAGGAACAACTAGCAAGGAAAACTGTTCAATCTGCTCCAGAGGATTTGCAATTCCATTACATTGATCCTTCTGGTGCAATTCAGGGCCCATTTAGTGGGGCTGACATTATTCAATGGTTTGAGGGTGGGTATTTTGGCTTAGATTTACCTGTCCGTCTGGCAAATGCACCAAATGACTTGCCATTTTCAGCACTTGGTGATGCCATGCCTCATTTACGATCTAAAGCCAAGCCACCACCAGGATTTTGTGGACCAAAGCAGAATGAATTCGCAGATACATTAGGTAACGCCAGTATTGGTAGCTTGGGAAAGCTTCATACTGGTTTGAATGAGATTGATCCTTTGAGGAATGAGACAAGGCATAAACATGGCTCAACGGTTGAAGCTGAAAACAGATTTCTGGAGTCACTTATGTCTGGTAATATAGGTTCTTCACCTCTGGAGAAGAGTCCCTTTTCTGAAGGCTTGCCAGGATATTTTGGAAATAATTCTAATAATTTGCCTTCGTTGGGAATAGACAATGGAAACAACCTTTTCCTGTTGGCCAAAAGAATGGAACTTGAGCGGCAAAGGTCTTTGTCCAATCCTTATGCATTTTGGCCTGGTATAGATGCTTCATCCAAGGTATCTAAGCCAGATATTGGCCTAGATGATCCAATTCAGCAAGCCAAACTTTTATCTTCAATAATAGACCATTCTCGCCAAACTTCTCATCCTCAAAGTGCTGATATGTCGGCCATTCTGCAAGGCTTGTCTGACAAAGCACCTCCTGGCATTAATGACGTTGCTGGCTGGTCAAAATTTGCTTCGCAGTGTGCTCCCGATCCTCTCCAAAGTAAACTTGACTTGCACCATGATCTTAACTTGTCTTCGCAGGCACCTTTTGGTTTCCAACAACAGAGATTACAACCTCAGCCGCCGTTGACAAATTTGCTTGCTCAAGCTGCTGATAATTCTACCTTAACTCCAGATAAGTTTCTTCCTTCCAGCTTATCTCAAGATCCACAACTGATAAGTAAATTGCAACAACAGCACCTGTTGCAGTTGCATTCGCAAGTGCCTTTCACTGCACAACAAATGTCATTGTTGGACAAAATTTTATTACTTAAGCAGCAGCAAAAACAAGAGGAGCAACAACAGTTATTACAGCAGCAGCAGCAGTTGCTCTCCCAGGTTCTATCAGAGCATCAGTCACGTCAGCATTTTGTCGATCCATCTTTTGGACAGTTACACGGCGCTCCTATACCTATTGGAAATGCATCTAATGATCCCTCTCAAGTCCAGCTATCACGAGAGAAGTTTCAGATTGGTTCACAAAAGCCCTTAAATGTACTAACTGATCATGCAACTACCTACGGAAATATGGCTCTGCAAGCTACCCAAGGAGCCAGTTACAATGTTAATTCAGAAGATCCGTCCCTTATTCTTCCACCTCAAATGTTTGGAAATGTTGTTCAGCAGCAGAAGTGTTGGACTGCTGCTATCCCTGAGCAGCAGCTTAATGATACTCGTCCGAAAGATGTTATACCTGGATCTAATGTTGTTGAGGGCTCACTTTTGCCTGGGATGTCTAGCAAATCAAACGAGGATGTGAATCTTGTACCGAAGTCATCTGATAGCCACACTATTATTAAAACTTCGGAAAAAATATCAGAGGATGTACCAAGGCTCGATGCAACTGTTACATCTTTTTCATCTGTTGATGCTACTATGGAACCTCTTCCTCTCAAGAACGCTGAAATCTCAGTTGCTATACCACCAGCAGCAGTTCATAATATTGAAATTTCCGTTCCCGACAGTGTACCTGCTGTGAAGGTTCAAGAAGCTAGTATGCCTATGGAAAAGCTGGCAAGGGATGGAAGCAGAGATGAAACCTCCTTGGAGCCAGAAGTGAAAAATGTTGAGGTACAAGAACCTAGAAAATCTTCTGATAAAAAGACCAAGAAGCAAAAATCTTCAAAGTTGCTGTCCTCTGACCAGGCCAAGGACTCTAAGAATTCTGGTATTCAGCAGTCAAAGCAATCAAAAAGTGGGAAATCAGAAAATGATTTGAAATTGAAGTCAGATAATATTGTGGGAAAATCAAGTGACACGGCTTGCTCTCCTCGGAAGATCAGAGATGGGGATGGCAAAATTGCCATTGTGGATAGTCAGCTAGATCAAAGCTCTGCCTCTGCTGTAAATTCCTGGAACGATGGTGAAACTGTTCAAGTGAGGGATGAGTCCAGACTAATTGGGTCTGATTCTGTGCTTAATTCACAAACTCAATCTAGTCAAAGAGCTTGGAAAATTGCTTCGAATTTCAAGCCAAAGTCTTTATTGGAGATTCAGGAGGAAGAGCAGAAAATGGCACATACAGAAACTGTTGTATCAGACATTTCAACTTCTATCAACACAATGAGTTTATCAACTCCTTGGGCTGGAATCGTCAGCAGTTCAGACCCAAAAGCTTCCAGAGAAATTCATAAAGATTCTGTGAATTCAGAATCAAGTGAGAAACATGAAAATTTATTGACTTCAAGAAGTAGAAAGAGCCAATTGCATGATCTGCTGGCGGAAGATGATATGGAAAAGTCTGGTGCAGGTGATGTTCGTGTTTCTGACACTGTTCAGATTGCTTCTTCTCCTCAGGTCATGGCCGTGCGAGCAGAACCTATGGATGAAAATTTTATTGAGGCAAAAGACACAAAAAAGAGCCGCAAGAAGTCTGCTAAGGCTAAGGGTATTGGTACCAAGGCCTCCTCTGCAGTCCCTTCTGCTGATGTGCCTGTTGGTTTAAGTCCCGTTGAGAAGGGGAAAATCTCCCGCCAGACGCAGCAAGAGAAGGAAGCGATGCCCGCCATTCCTTCTGGGCCTTCTTTTGGTGATTTTGTTCTGTGGAAGGGAGAAGTTGCTAATGTGGCCCCTGCTCCAGCATGGTCCAGTGACTCTGGGAAGGTCGCCAAACCCACATCTTTGAGGGATATTCAGATGGAGCAGGAAAGAAAAATCTCTGCTGCTCAGCATTCTCAACAAATCTCTACTCCGCAAAAGGCTCAGCCTACTCAGGTTGGTCGTAGCAGCCGCACTACTACTCCTTCCTGGTCTCTCTCTGCATCTTCCCCATCGAAGGCTGCATCATCCCCCCTTCAGAATATTCCTACTCAGTCAAAACATGGAGGTGATGATGACCTATTTTGGGGCCCCATTGAGTCAAAGCAGGAGAATCAGCGGGTTGATGTACGTCCTGGGAGCCACGGAAACTGGGGAAATAGGAACACCCCTGTAAAAGCAGTAGCTTCAACTGGGTTGTTAAGCCGACAAAAATCATCTGGTGGCAAAGCTGACCATCTTTCGTCCTCGCCTGCACAATCGTCTCAGAAAGGCAAGCAAGATCCAATTACCAAACATTCAGAAGCTATGGGCTTCCGTGATTGGTGTGAGAATGAATGTGTAAGGCTCATTGGGACAAAAGACACGAGTTTCCTGGAATTCTGCTTGAAGCAGTCAAGATCTGAGGCAGAGCTGCTTTTGATAGAGAATCTTGGATCATATGATCCCGACCATGAGTTCATCGATCAATTCCTCAATTACAAGGAGTTGCTCCCAGCAGATGTTATTGAAATTGCATTCCAAAGTTGGAACGAGAGGAAGGTATCTGCAATGGCTTCCCGAGATGTGAATTCCGGCAATGCTGGTGGGGGGGATCTGGACCCGGACTTGTCTGCTGGCCGAGATGGGTCGGCGAAAGGTGGAGGGAAGAAGAAAGGAAAGAAAGGAAAGAAGATCAATCCATCAGTTTTGGGGTTTAATGTAGTTAGTAACCGAATCATGATGGGTGAGATTCAGACGGTTGAAGATTAG 5538 44.53 MAGRFDFGSRPNLSVSSPLHAANDVQGSENPIPLSPQWLLPKPGESKHGMGTGENNFSHQPVYGNRMDTMKGSENSEDMNEIQKKKEIFRPSLTDSEIGRRDRWHDEERENSSSVRKDRWRDGEKEIGDGRKMDRWNEDSSTRVFRESRRGPSERWSDSSNRDNVHYDQRRESKWNTRWGPDDKETEGFREKRVDSGRDGDLHLDKNFSHVSNYGKNDRDGDHYRPWRSSSSQGRGKGEPPHHQTQTPIKQVPAFSHRGRADNTPPTFSLGRGIISSGVNPPNSIYSSPHSLGASSEKSGREPYYYKYSRTKLLDVFRTTSLTSQQTLKDGFVPVPTLTLDEPLEPLALCVPTTEEMAFLKGIDKGEIVSSGAPQVSKDGRNSSEFMQTRRTKLGVSPSLGSREDLPHGFDDCNDDKDDSTTKPGHTNYSEVTTERQLPYHRPLAHASSTFKSEAFREDDNAMRKADEGPVSRESSVKGGTNVQHGRTWDASSSLEQLLNTSLPDWRDNPNNINSGTPDKGLQSSKNLNDGWGSNSVTPSYPKENPKWHTGDESILRRQLSGILDKEQLARKTVQSAPEDLQFHYIDPSGAIQGPFSGADIIQWFEGGYFGLDLPVRLANAPNDLPFSALGDAMPHLRSKAKPPPGFCGPKQNEFADTLGNASIGSLGKLHTGLNEIDPLRNETRHKHGSTVEAENRFLESLMSGNIGSSPLEKSPFSEGLPGYFGNNSNNLPSLGIDNGNNLFLLAKRMELERQRSLSNPYAFWPGIDASSKVSKPDIGLDDPIQQAKLLSSIIDHSRQTSHPQSADMSAILQGLSDKAPPGINDVAGWSKFASQCAPDPLQSKLDLHHDLNLSSQAPFGFQQQRLQPQPPLTNLLAQAADNSTLTPDKFLPSSLSQDPQLISKLQQQHLLQLHSQVPFTAQQMSLLDKILLLKQQQKQEEQQQLLQQQQQLLSQVLSEHQSRQHFVDPSFGQLHGAPIPIGNASNDPSQVQLSREKFQIGSQKPLNVLTDHATTYGNMALQATQGASYNVNSEDPSLILPPQMFGNVVQQQKCWTAAIPEQQLNDTRPKDVIPGSNVVEGSLLPGMSSKSNEDVNLVPKSSDSHTIIKTSEKISEDVPRLDATVTSFSSVDATMEPLPLKNAEISVAIPPAAVHNIEISVPDSVPAVKVQEASMPMEKLARDGSRDETSLEPEVKNVEVQEPRKSSDKKTKKQKSSKLLSSDQAKDSKNSGIQQSKQSKSGKSENDLKLKSDNIVGKSSDTACSPRKIRDGDGKIAIVDSQLDQSSASAVNSWNDGETVQVRDESRLIGSDSVLNSQTQSSQRAWKIASNFKPKSLLEIQEEEQKMAHTETVVSDISTSINTMSLSTPWAGIVSSSDPKASREIHKDSVNSESSEKHENLLTSRSRKSQLHDLLAEDDMEKSGAGDVRVSDTVQIASSPQVMAVRAEPMDENFIEAKDTKKSRKKSAKAKGIGTKASSAVPSADVPVGLSPVEKGKISRQTQQEKEAMPAIPSGPSFGDFVLWKGEVANVAPAPAWSSDSGKVAKPTSLRDIQMEQERKISAAQHSQQISTPQKAQPTQVGRSSRTTTPSWSLSASSPSKAASSPLQNIPTQSKHGGDDDLFWGPIESKQENQRVDVRPGSHGNWGNRNTPVKAVASTGLLSRQKSSGGKADHLSSSPAQSSQKGKQDPITKHSEAMGFRDWCENECVRLIGTKDTSFLEFCLKQSRSEAELLLIENLGSYDPDHEFIDQFLNYKELLPADVIEIAFQSWNERKVSAMASRDVNSGNAGGGDLDPDLSAGRDGSAKGGGKKKGKKGKKINPSVLGFNVVSNRIMMGEIQTVED 1845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1024410 1033364 - CmoCh05G002410.1 Cmo05g00241 382376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00241 1845 MobiDBLite consensus disorder prediction 1 264 - -
Cmo05g00241 1845 MobiDBLite consensus disorder prediction 1533 1695 - -
Cmo05g00241 1845 Coils Coil 932 956 - -
Cmo05g00241 1845 MobiDBLite consensus disorder prediction 1375 1410 - -
Cmo05g00241 1845 MobiDBLite consensus disorder prediction 1645 1689 - -
Cmo05g00241 1845 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1845 - -
Cmo05g00241 1845 MobiDBLite consensus disorder prediction 452 472 - -
Cmo05g00241 1845 MobiDBLite consensus disorder prediction 1381 1410 - -
Cmo05g00241 1845 CDD GYF 580 637 IPR003169 GO:0005515
Cmo05g00241 1845 MobiDBLite consensus disorder prediction 1561 1616 - -
Cmo05g00241 1845 MobiDBLite consensus disorder prediction 405 424 - -
Cmo05g00241 1845 MobiDBLite consensus disorder prediction 1622 1638 - -
Cmo05g00241 1845 Gene3D - 568 648 IPR035445 -
Cmo05g00241 1845 MobiDBLite consensus disorder prediction 1180 1223 - -
Cmo05g00241 1845 MobiDBLite consensus disorder prediction 375 396 - -
Cmo05g00241 1845 SUPERFAMILY GYF domain 572 637 IPR035445 -
Cmo05g00241 1845 Pfam GYF domain 583 619 IPR003169 GO:0005515
Cmo05g00241 1845 ProSiteProfiles GYF domain profile. 580 631 IPR003169 GO:0005515
Cmo05g00241 1845 MobiDBLite consensus disorder prediction 475 543 - -
Cmo05g00241 1845 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1845 - -
Cmo05g00241 1845 SMART gyf_5 581 636 IPR003169 GO:0005515
Cmo05g00241 1845 MobiDBLite consensus disorder prediction 1783 1820 - -
Cmo05g00241 1845 MobiDBLite consensus disorder prediction 10 33 - -
Cmo05g00241 1845 MobiDBLite consensus disorder prediction 1178 1271 - -
Cmo05g00241 1845 MobiDBLite consensus disorder prediction 1224 1242 - -
Cmo05g00241 1845 MobiDBLite consensus disorder prediction 371 553 - -
Cmo05g00241 1845 MobiDBLite consensus disorder prediction 227 252 - -
Cmo05g00241 1845 MobiDBLite consensus disorder prediction 1459 1493 - -
Cmo05g00241 1845 MobiDBLite consensus disorder prediction 71 226 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00241 - - - cmo:103487961 2977.58
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00241 Cmo12g00428 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00241 Cmo-Chr5:1024410 Cmo08g00007 Cmo-Chr8:37679 3.47E-15 dispersed
Cmo12g00428 Cmo-Chr12:2625118 Cmo05g00241 Cmo-Chr5:1024410 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g930 Blo01g01558 . Bda01g00536 Bda03g00257 Bpe02g00397 Bpe04g00211 Bma04g00206 Bma01g02315 Cmo05g00241 Cmo12g00428 . . . Car12g00452 Sed11g1026 . Cpe07g00430 Bhi04g00258 Tan02g1949 Cmetu03g2269 . . . Lcy13g1995 Cla08g01498 Cam08g1988 Cec08g1563 Cco08g1700 Clacu08g1678 . Cre08g1461 Cone4ag1904 Cone7ag1818 . . . . . Cme03g01966 . . . . . . . . . . . Cma12g00478 Cma05g00232 Car05g00194 . Cpe11g00193 . . . . . . . . . . . . . . . Lsi08g01403 Csa02g02043 Chy03g01470 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004078 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 3 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00241 Cmo_Chr05 FPKM 2.356322 3.608153 2.066079 2.346254 1.606243 2.178942 1.808962 1.362671 1.645515 0.0