Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00242 ATGTCAATAGGTTATCGTGCAGTGAAATGGAGGGAAAATTTGGCGCCATTACCGACGATGCTCTCTAGTCTTCCTCTATTTAAAGCCGTTTCGCCTTCTTCTAACCCCACACAGACCTGCGTCAATTTCAGGTTCAATTCTCATTTCTCCCGAACCCTAACAATGGCGCAGAACTGCCCCTCAGAAGACAATGTATCGTTGCGGTCGCCCAAGGTACCAAAGCTTGCTCATGAGAGCGGTGAGTCTGAAAGATTTAGCTATTCATCGACGCTTCTCAGAGTAAAGAAACTGTCCGATAATGCCGTGTTGCCATCGCGAGCCTCCGCTCTCTCCGCTGGTTACGATCTCTCCAGTGCAAAAGATACGATTATCCCTTCTCGAGGAAGAGGCTTGGTTCCGACTGATTTGAGCATCGCGATTCCGGACGGAACTTACGCTCGAATTGCACCGCGTTCGGGTTTGGCTTTGAAGCATGCGATCGATGTTGGTGCGGGTGTGATAGATGCTGATTACAGAGGTCCCCTGGGAGTAATATTGTTCAATCACTCTGATGCGGATTTCGAGGTGAAGATGGGCGACAGAATCGCTCAACTGATTCTTGAGAAAATTGTGACGCCGGAGGTGCTGGAGGTCGAGGATTTGGATTCCACTCTCCGAGGTGAATCTGGCTTCGGCTCTACAGGTGTTTGA 690 49.71 MSIGYRAVKWRENLAPLPTMLSSLPLFKAVSPSSNPTQTCVNFRFNSHFSRTLTMAQNCPSEDNVSLRSPKVPKLAHESGESERFSYSSTLLRVKKLSDNAVLPSRASALSAGYDLSSAKDTIIPSRGRGLVPTDLSIAIPDGTYARIAPRSGLALKHAIDVGAGVIDADYRGPLGVILFNHSDADFEVKMGDRIAQLILEKIVTPEVLEVEDLDSTLRGESGFGSTGV 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1034762 1036256 + CmoCh05G002420.1 Cmo05g00242 382377

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00242 229 Pfam dUTPase 100 228 IPR029054 -
Cmo05g00242 229 CDD trimeric_dUTPase 112 200 IPR033704 -
Cmo05g00242 229 PANTHER DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE 63 229 IPR008181 GO:0000287|GO:0004170|GO:0006226|GO:0046081
Cmo05g00242 229 PANTHER DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE 63 229 - -
Cmo05g00242 229 TIGRFAM dut: dUTP diphosphatase 93 228 IPR008181 GO:0000287|GO:0004170|GO:0006226|GO:0046081
Cmo05g00242 229 SUPERFAMILY dUTPase-like 87 229 IPR036157 -
Cmo05g00242 229 Gene3D - 81 229 IPR036157 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00242 K01520 dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23] - csv:101218654 310.071
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g931 . . . . . . . . Cmo05g00242 . . . . . . . . Bhi04g00255 . . . Hepe10g0651 . . Cla08g01497 Cam08g1987 Cec08g1562 Cco08g1699 Clacu08g1677 . Cre08g1460 . Cone7ag1819 . . . . . Cme03g01965 . . . . . . . . . . . . Cma05g00234 . . . . . . . . . . . . . . . . . . . Csa02g02044 Chy03g01469 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006777 1 1 3 3 1 1 0 1 1 1 1 1 1 1 0 1 1 1 0 1 1 2 1 1 0 1 1 1 0 2 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00242 Cmo_Chr05 FPKM 0.0 0.0 10.530658 9.674946 28.969206 28.317652 24.9802 6.071201 7.054873 6.779209