Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00254 ATGGATATCAGAGAGCAGGAGAAGGAAGTAATAATACCTGCGGCTTCCGTCGGTGGTGGTTACGCTCATATTTTTGGGGAAACCTCGTCCGGAGGAGTCGTCGACCGGAGAATAGAGTCGATTCATAATGGCTCTCATCACCATATCCAAACCGACCTCCACGATGCCGACTGTGTTGCGGCTACTACAGAGAACATTGGCAACGGCGGCGGCGGCGGCGGAGGTAGCGGCGGAGTTAGCGGCGGAGGCGGAGGCGGAGGAGGAGGAGGAGGTAGTTTTTCATCTGGCGGTAGATCCAAGGCGCGGGGGGCGGGTGCTGGAGTTAGGTATAGAGAATGTTTGAAGAATCACGCGGCGAGCGTTGGGGGGAATATATACGATGGATGCGGAGAGTTTATGCCAAGCGGAGAAGACGGAACCCTAGAGGCTCTAAAATGCGCCGCTTGTGAATGTCATCGGAACTTCCACCGGAAAGAAATCCACGGCGAGAGTCAATTAAACATCAGTCCTAATTACAGAAGAGGACTAATGCTCAACCATCTCCAACTTCCTGCGCCATTGCCGTCCCCTTCCGCTCTCCACGGCCACCATAAATTCTCCATGGCATTGAACCTCCATTCCAGTCCTAATGCTCCAATCATCGCTCCAATGAACGTCGCCTACGGCGGTGGTGGCGGAACCGAGTCCTCCAGCGAGGATTTGAACGTTTTCCATTCGAATGCCGAGGTGATGCCGCCGTCTTCGTTCTCCCTCAAAAAGCGGTACCGTACAAAGTTCACACAAGAACAAAAGGATCGGATGCTGGAGTTCGCCGAGAGAGTCGGATGGAGGATTCAAAAGCAAGACGAAGAAGACGTCGAACGATTCTGTAGCGATGTGGGAGTGAAACGGCAAGTCCTCAAAGTCTGGATGCACAACAACAAAAACACAGTGAAGAAGCCGAACGAAAATCACGAACCTGAACCCGCCGCCGTCGCCGCCGCCGTCGCCGTCGACGTCGGCACCTGCACCGTCGTCACAAGTGAATCGTAA 1032 54.07 MDIREQEKEVIIPAASVGGGYAHIFGETSSGGVVDRRIESIHNGSHHHIQTDLHDADCVAATTENIGNGGGGGGGSGGVSGGGGGGGGGGGSFSSGGRSKARGAGAGVRYRECLKNHAASVGGNIYDGCGEFMPSGEDGTLEALKCAACECHRNFHRKEIHGESQLNISPNYRRGLMLNHLQLPAPLPSPSALHGHHKFSMALNLHSSPNAPIIAPMNVAYGGGGGTESSSEDLNVFHSNAEVMPPSSFSLKKRYRTKFTQEQKDRMLEFAERVGWRIQKQDEEDVERFCSDVGVKRQVLKVWMHNNKNTVKKPNENHEPEPAAVAAAVAVDVGTCTVVTSES 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1089513 1090544 + CmoCh05G002540.1 Cmo05g00254 382389

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00254 343 MobiDBLite consensus disorder prediction 67 101 - -
Cmo05g00254 343 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 5 100 315 - -
Cmo05g00254 343 Pfam ZF-HD protein dimerisation region 108 160 IPR006456 -
Cmo05g00254 343 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 109 160 IPR006456 -
Cmo05g00254 343 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 110 159 IPR006456 -
Cmo05g00254 343 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 100 315 - -
Cmo05g00254 343 Gene3D - 240 313 - -
Cmo05g00254 343 SUPERFAMILY Homeodomain-like 245 313 IPR009057 -
Cmo05g00254 343 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 252 309 IPR006455 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00254 - - - cmax:111492398 578.556
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00254 Cmo12g00418 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00772 Cmo-Chr3:6406729 Cmo05g00254 Cmo-Chr5:1089513 4.00E-62 dispersed
Cmo05g00254 Cmo-Chr5:1089513 Cmo07g00483 Cmo-Chr7:2202787 9.94E-68 dispersed
Cmo12g00418 Cmo-Chr12:2570610 Cmo05g00254 Cmo-Chr5:1089513 1.32E-178 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g953 . . . . . . . . Cmo05g00254 Cmo12g00418 . . . . . . . Bhi04g00174 . . . Hepe10g0633 . . Cla08g01483 Cam08g1972 Cec08g1547 Cco08g1684 Clacu08g1662 . Cre08g1446 Cone4ag1915 Cone7ag1827 Cone17ag1347 Cone20ag0136 . . . Cme03g01952 Blo17g00796 Blo18g00811 Bda08g01280 Bda01g01497 Bpe02g01693 . Bma01g00760 Bma05g00124 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01390 Csa02g02058 Chy03g01454 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005524 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9793 PF04770 ZF-HD_dimer 1.50E-29 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00254 Cmo_Chr05 FPKM 0.485293 1.321071 1.707546 1.410812 1.163682 0.566189 0.975065 2.729411 1.988108 2.45639