Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00259 ATGCAGGGGATCGTGAGAGCAATACGATCGTGGCAAGAGACGTTGAAGATCGCGAACTCGCATCACTCGTGTAGGAGAGAAACGAATCAAGTGGAAAAGATTTTGGAAGGATCAGAATCAAGAGGTTCGTCTTCTCCACTGAAAGGTTTGGAGAATATTACCGTGGCGGAGATCGTTTCGAGAAATGGAGATGGAAGTATTGGCTCCTCGTGGTTTTCCTGCAGCGCGGATGATGCGGCCATTGATACCGTGCAAAATATGGCTAGAAACAACGTTGGATCGTTGGTGGTGTTGAAGCCTGAAGGACAACACATCGCCGGAATTGTAACGGAAGGAGACTATCTGAAGAAGATAATAGCAGATGGGAGATGTCCCATATACACAAAAGTTGGGGAAATAATGACTTGTGAGGACAAACTAGTAACCGTAACGTCCGACACGAACATCCTTAAAGCAATGCAGCTTATGACAGAGAATCGCATAAGACATGTTCCTGTGATAGATGGCAAACTAGTTGGCATCATTTCTGTAGTAGATGTTGTCAAAGCAGTGGTAAAGCAGCAAAATGGGGAACTCGAGCGACTAAATGAGTATATAAAAGGAGAATCGTATTAA 615 44.39 MQGIVRAIRSWQETLKIANSHHSCRRETNQVEKILEGSESRGSSSPLKGLENITVAEIVSRNGDGSIGSSWFSCSADDAAIDTVQNMARNNVGSLVVLKPEGQHIAGIVTEGDYLKKIIADGRCPIYTKVGEIMTCEDKLVTVTSDTNILKAMQLMTENRIRHVPVIDGKLVGIISVVDVVKAVVKQQNGELERLNEYIKGESY 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1110649 1112572 + CmoCh05G002590.1 Cmo05g00259 382394

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00259 204 Pfam CBS domain 73 118 IPR000644 -
Cmo05g00259 204 Pfam CBS domain 130 185 IPR000644 -
Cmo05g00259 204 PANTHER CYSTATHIONINE BETA-SYNTHASE (CBS) FAMILY PROTEIN 1 202 - -
Cmo05g00259 204 SMART cbs_1 70 119 IPR000644 -
Cmo05g00259 204 SMART cbs_1 139 185 IPR000644 -
Cmo05g00259 204 ProSiteProfiles CBS domain profile. 67 126 IPR000644 -
Cmo05g00259 204 CDD CBS_pair_bac_euk 68 176 IPR044725 -
Cmo05g00259 204 ProSiteProfiles CBS domain profile. 134 192 IPR000644 -
Cmo05g00259 204 Gene3D - 48 204 IPR046342 -
Cmo05g00259 204 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSX3, MITOCHONDRIAL 1 202 - -
Cmo05g00259 204 SUPERFAMILY CBS-domain pair 69 191 IPR046342 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00259 - - - cmax:111491856 365.925
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00259 Cmo-Chr5:1110649 Cmo20g00320 Cmo-Chr20:1559441 1.04E-52 dispersed
Cmo12g00409 Cmo-Chr12:2536849 Cmo05g00259 Cmo-Chr5:1110649 3.51E-114 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g958 . . . . . . . . Cmo05g00259 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g01694 . Bma01g00759 . . . . . Cma05g00253 Car05g00211 . . . . . . . . . . . . . . . . . Lsi08g01384 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012002 0 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 1 1 0 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00259 Cmo_Chr05 FPKM 38.306339 42.529697 45.002655 46.865791 82.362778 79.086281 89.272766 47.684418 51.988071 49.020924
Cmo05g00259 Cmo_Chr12 FPKM 24.985559 27.297667 28.177401 30.069475 39.461143 35.340862 38.875668 39.499538 37.512234 44.717186