Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00267 ATGGCGACCCCAGTTGAGCCTCCAAATGGGGTTAGATCTCAAGGAAAGCATTACTATTCAATGTGGCAGACATTGTTTGAGATTGATACTAAATATGTACCCATCAAGCCTATTGGGCGAGGGGCATATGGCATAGTGTGTTCTTCTGTGAATAGGGAAACCAATGAGAAAGTTGCTATAAAGAGGATACATAATGCATTCGAGAATCGTATCGATGCCCTCCGAACGTTGCGTGAATTGAAGCTCCTTAGACATCTTCGGCACGAAAACGTCATATGTTTGAAAGATGTGATGATGCCTATCCATAGGAGAAGCTTCAAAGATGTTTACTTGGTTTATGAGCTGATGGATACTGATTTACATCAGATTATTAAGTCTTCTCAAATGCTTACCAATGATCACTGCCAGTATTTTCTCTTTCAGTTGCTCCGAGGACTAAAGTATCTGCATTCTGCGAACATCCTACACCGGGACTTGAAGCCGGGGAACCTCCTTGTCAACGCAAATTGTGACCTTAAGATATGCGATTTCGGGTTAGCACGTACAAGCAATGGGAAGAATCAGTTCATGACAGAGTATGTCGTAACTCGCTGGTACCGAGCCCCAGAACTGCTGCTCTGCTGCGAGAACTACGGGACATCGATCGATGTGTGGTCTGTAGGATGCATCTTTGCCGAGCTTCTCGGTAGGAAACCTATCTTCCCCGGTACGGAATGTTTGAATCAGCTCAAATTGATAATTAACATATTGGGTAGCCAAAGAGAGGAAGATCTTGAGTTCATAGACAATCAAAAGGCAAGGAGGTATATAAAATCCCTCCCATACTCTCCAGGGGCTCCTCTGTACCATCTTTATCCGAACGCTCATCCTCTTGCCATCGATCTGCTACAAAAGATGCTCATTTTCGACCCATCGAAGAGGATTAGTGTAACCGAAGCATTGCAACATCCTTTCATGTCGCCACTGTATGATCCAAACATCAATCCTCCAGCTCAGGTCCCGATCGATCTTGACATAGACGAGGAGCTAGGTGAAGAAATGATACGAGAGATGATGTGGAAAGAAATGCTTCATTACCATCCCGAAGATCTGGAAAAACATGCCGAAATGACATGTTTTCATCCCGAACCTACTTCGAGTAGTACTGCGGTGTATTCTTGA 1161 44.19 MATPVEPPNGVRSQGKHYYSMWQTLFEIDTKYVPIKPIGRGAYGIVCSSVNRETNEKVAIKRIHNAFENRIDALRTLRELKLLRHLRHENVICLKDVMMPIHRRSFKDVYLVYELMDTDLHQIIKSSQMLTNDHCQYFLFQLLRGLKYLHSANILHRDLKPGNLLVNANCDLKICDFGLARTSNGKNQFMTEYVVTRWYRAPELLLCCENYGTSIDVWSVGCIFAELLGRKPIFPGTECLNQLKLIINILGSQREEDLEFIDNQKARRYIKSLPYSPGAPLYHLYPNAHPLAIDLLQKMLIFDPSKRISVTEALQHPFMSPLYDPNINPPAQVPIDLDIDEELGEEMIREMMWKEMLHYHPEDLEKHAEMTCFHPEPTSSSTAVYS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1150727 1155364 + CmoCh05G002670.1 Cmo05g00267 382402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00267 386 SMART serkin_6 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g00267 386 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 12 366 - -
Cmo05g00267 386 SUPERFAMILY Protein kinase-like (PK-like) 24 326 IPR011009 -
Cmo05g00267 386 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 12 366 - -
Cmo05g00267 386 CDD STKc_TEY_MAPK 26 361 - -
Cmo05g00267 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Cmo05g00267 386 Gene3D Phosphorylase Kinase; domain 1 19 355 - -
Cmo05g00267 386 ProSitePatterns MAP kinase signature. 67 170 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cmo05g00267 386 ProSitePatterns Protein kinases ATP-binding region signature. 38 61 IPR017441 GO:0005524
Cmo05g00267 386 Pfam Protein kinase domain 33 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g00267 386 ProSiteProfiles Protein kinase domain profile. 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g00267 386 Gene3D Transferase(Phosphotransferase) domain 1 116 345 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00267 Cmo12g00395 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00267 Cmo-Chr5:1150727 Cmo08g00862 Cmo-Chr8:5567966 2.41E-153 dispersed
Cmo17g00427 Cmo-Chr17:2848649 Cmo05g00267 Cmo-Chr5:1150727 4.20E-149 dispersed
Cmo16g00687 Cmo-Chr16:3402841 Cmo05g00267 Cmo-Chr5:1150727 0 transposed
Cmo12g00395 Cmo-Chr12:2454389 Cmo05g00267 Cmo-Chr5:1150727 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74343 PF00069 Pkinase 1.70E-71 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00267 K20535 - csv:101213478 751.51