Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00273 ATGCAACACTGCCACCGCCATAACCACCGCCGTCCGATCACCGCCGCCGCCGCCAACTTCAAATTATTCATTAATGATTCAACAAAGATGACTACTAAGCTTCTCTTAGCCTTTGCCTTCTGTCGTTTGATAGCCACTGTCGGACTCAACATGGGTCCGACGGCGGAGCTTCCCCGCCTCGGAATCGACGGCCTACTTTCCGTCGACCCCTCCGACGTCCAAATCGCTTCTGTCGATTTTGGCCTCATGACGCGGAATCCTCCTCTCGCTGTCTTACACCCAGCCTCTGCTGATGACGTGGCCAGATTAATCCGGGCAGCAGCGGCGGCGGCGGCGGCGGAGGAGGAAGGGGAGTATGGTGGGTTTACGGTGTCAGCGAGAGGACATGGACATTCGATAAATGGGCAAACGCAGACGGGGAATGGGGTGGTGATTGAAATGAACGGCGGTGGAAGACGGCACCGACGCGGCGGCGAGAGGAGTTCTCCGCCGCAACCTGTGGTGGCGGAGAGAGAGAAATTTGTGGATGTATGGGGCGGAGAGCTGTGGATTGACGTGCTGAAATCGACTTTGGGGTATGGATTGGCGCCGAGATCGTGGACGGATTATTTGTATTTATCCGTTGGCGGGACACTCTCCAACGGCGGAATCAGCGGCCAAGCCTTCAACCACGGCCCTCAGATCAGCAATGTCCATGAACTCGATGTCGTGACAGGAAACGGGGAGATAATCAAATGTTCAAACGAAGAAAATCCAGATCTTTTCCACGCAGTTCTTGGTGGATTAGGACAATTTGGGATCATAACACGAGCAAGAATCCTGCTCGAACCCGCGCCGGAAAGGGTCCGGTGGATTCGAGTTCTATACTCAAATTTTGAAGCATTTAGGAAGAATCAAGAATGGCTAATATCGTTACATGCAAAGCCAGAGAATGAGAAATTTGACTACGTGGAAGGCTTCGTGATCGTTGATGAAGCTCTAATCAACAACTGGAGATCATCCTTCTTCTCACCGGCTAATCCGGTTAAAATCTCCTCCTTCAACAACAAGCCAGATGGAGATGTTTTATACTGCTTGGAGATCACAAAAAACTACCATGAATCCGCATCTCCCACCGTTGATCAGGAAGTTGAGGCGTTATTGAAGGAGCTGGATTACATACCCGAGTCGGTTTTCACAACGGACTTGGCTTACGTGGACTTTCTTGACCGGGTTCATAAGGCCGAGTTGAAGCTCCGGTCAAAAGGCTTATGGGATGTTCCACATCCATGGCTCAACCTCTTCGTCCCCAAGTCAAGAATCGCCGATTTTGACCGTGGAATTTTCAAGGGCATTTTGGGAAATAACACCAGTGGGCCCATCCTCATCTACCCCATGAACAAGCACAAGTGGGACCCCAGGAGCTCCGCGGTGGTCCCGGAGGATGACGTGTTCTACCTAGTGGCCTTGCTCCGGTCGGCGTTGGACAACGGCGAGCCAACGCAGTCGTTGGAGTATTTAAGCGACCAGAATCATCAGATTTTGGCATTCTGCGCTAAGGAGGGGATCAAAGTGAAACAGTACCTGCCTCACTACACGACGGAGCGGGAATGGGCGGAGCATTTCGGCGATAAGTGGCCGGAGTTTCAGCAAAGGAAGATGAAGTTTGATCCACGTCACATTCTCGCCACCGGGCAGAGGATATTTCCGCCCTTTACGACGGTGAACACGGCGGTTTCCCGGTAG 1725 52.35 MQHCHRHNHRRPITAAAANFKLFINDSTKMTTKLLLAFAFCRLIATVGLNMGPTAELPRLGIDGLLSVDPSDVQIASVDFGLMTRNPPLAVLHPASADDVARLIRAAAAAAAAEEEGEYGGFTVSARGHGHSINGQTQTGNGVVIEMNGGGRRHRRGGERSSPPQPVVAEREKFVDVWGGELWIDVLKSTLGYGLAPRSWTDYLYLSVGGTLSNGGISGQAFNHGPQISNVHELDVVTGNGEIIKCSNEENPDLFHAVLGGLGQFGIITRARILLEPAPERVRWIRVLYSNFEAFRKNQEWLISLHAKPENEKFDYVEGFVIVDEALINNWRSSFFSPANPVKISSFNNKPDGDVLYCLEITKNYHESASPTVDQEVEALLKELDYIPESVFTTDLAYVDFLDRVHKAELKLRSKGLWDVPHPWLNLFVPKSRIADFDRGIFKGILGNNTSGPILIYPMNKHKWDPRSSAVVPEDDVFYLVALLRSALDNGEPTQSLEYLSDQNHQILAFCAKEGIKVKQYLPHYTTEREWAEHFGDKWPEFQQRKMKFDPRHILATGQRIFPPFTTVNTAVSR 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1177374 1180900 - CmoCh05G002730.1 Cmo05g00273 382408

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00273 574 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 279 562 IPR015345 GO:0009690|GO:0019139|GO:0050660
Cmo05g00273 574 Gene3D - 281 521 IPR016170 -
Cmo05g00273 574 PANTHER GULONOLACTONE OXIDASE 32 565 - -
Cmo05g00273 574 Pfam FAD binding domain 88 247 IPR006094 GO:0050660
Cmo05g00273 574 Gene3D - 147 280 IPR016169 -
Cmo05g00273 574 PANTHER CYTOKININ OXIDASE 5-RELATED 32 565 - -
Cmo05g00273 574 SUPERFAMILY FAD-linked oxidases, C-terminal domain 279 562 IPR016164 GO:0003824|GO:0050660
Cmo05g00273 574 ProSiteProfiles PCMH-type FAD-binding domain profile. 84 278 IPR016166 GO:0071949
Cmo05g00273 574 SUPERFAMILY FAD-binding/transporter-associated domain-like 63 277 IPR036318 GO:0050660
Cmo05g00273 574 Gene3D - 69 562 IPR016167 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00273 K00279 CKX; cytokinin dehydrogenase [EC:1.5.99.12] - csv:101212272 942.569
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00273 Cmo12g00392 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00273 Cmo-Chr5:1177374 Cmo12g01337 Cmo-Chr12:11609815 1.70E-174 dispersed
Cmo12g00392 Cmo-Chr12:2433817 Cmo05g00273 Cmo-Chr5:1177374 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1010 . . . . . . . . Cmo05g00273 Cmo12g00392 . . . Car12g00418 . . Cpe07g00396 Bhi04g00207 . . . Hepe10g0607 . . Cla08g01458 Cam08g1944 Cec08g1518 Cco08g1657 Clacu08g1634 . Cre08g1420 . . Cone17ag1365 Cone20ag0116 . . . Cme03g01922 . . . . . . . . . . . Cma12g00441 Cma05g00269 Car05g00223 . Cpe11g00222 . . . . . . . . . . . . . . . Lsi08g01364 Csa02g02088 Chy03g01426 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009284 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00273 Cmo_Chr05 FPKM 482.087158 548.790222 226.803604 224.675735 145.869797 151.313507 129.185593 73.068878 79.757919 70.307274