Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00275 ATGAATTCTGATGGTTCTCGAAAAATCAAGCCGATCTCGGCTGGTCCTTTTGGAGGAACAGGTGGAAATTATTGGGACGATGGAGTTTTTTCGACCATCAGGCAGCTGGTAATTTGCCATGGAGCTGGTATCGACTCGATCAAGATTCAATATGATGTGAAGGGAAGTTCGATTTGGTCAGATAAACATGGAGGAAACGGTGGCACTAAAACAGACACGGTGAAGCTCGATTTCCCAGACGAGTACTTGACTATGATCCGTGGACACTACGGTAGCTTTGTGTCGTTCGACAAAGTTTATGTGCGATCCCTGACTTTTATGAGCAACAAAAGGAAGTTCGGGCCGTATGGGGTCGAACTAGGAACGATTTTCTCGTTCCCAGCGACCGAGGGCAAGATTGTTGGGTTCCATGGCAGGAGTGGATTGTACCTGGATGCCATTGGAGTTTACCTAAAGCCTATGCCAATACAAACGCCATCTAAAGGAATGATTCAGTCACCGAATTACGTTGCTTGTAAGGCTGAAAGTGAAGGCTATTCAATTATACAAGGAAGTGTTGGGCAAAATTATGATATTGTTCTTGCTCTACGACAGAAGGATGAATTCAAAAAGCCTCTTCCAAATACTATCTCGAAACAAGTATCTAGTTCCTCGAGCTCGGAATCGAGTGACGATGAATCCACAGACAAGAGGCCGGTGAAGAAGGGACCGTCGAAAGTTGAAAATGCGGTACCGTGTGGACCGTGGGGTGGCTCGGGTGGAACTACATTTGATGATGGACATTACTCCGGTATTAGGGAAATTAATGTGTCGCGAAATGTCGGTATTGTATATATAAAAGTTCTGTATGCTTGGGATGAGGAATCTATATGGGGAACCCGAGCAGGTGGAAAAGGAGGATTCAAACATGACAAGGTTGTTTTTGATTATCCCTATGAAATCTTGACTCATGTAACTGGACATTATGGGCCTGTAATGTACATGGGACCTAATGTTATCAAGTCACTCACATTCCATACTACAAAAGCCAAGTACGGGCCGTTCGGGGAGGCGCTAGGAACCCCGTTTAGTACCAACGTCAAGGAGGGAAAGATTGTTGGATTTCATGGCAGGAAAGGCTTGTTCCTAGATGCTCTTGGCGTGCACTTAGTCGAAGGAAAGGTGACCCCGGCGTCTCGTCCTCCCTCCAGTGAAATCGTTCCTGCCGCACGACCACCACTTCTTGGAAATGAGCTTGTCCCTTGGACTAAGAAAGTGGCACCTTCAAAAGGAGGAGCACTTGAAGAGATTACTCGTGGTGTCGTAAAAGAACCGGCACCTTGTGGACCGGGACCGTGGGGCGGGGACGGGGGTAAACCATGGGATGATGGGGTATTCTCTGGCATTAAACAGATATACTTAACACGGTCTCTCGAAGCGTTTTGTTCGATTCAAATCGAGTATGATCGAAACAAACAATCGGTTTGGTCAGTCAAGCATGGAGGAAACAGTGGAACAAGCATACATCGGGTAAAATTGGATTATCCACACGAAGTACTGACTTGTATATCGGGATATTACGGTTACGTCGGTAAAGGCGAGCGACAACAAGTTATAAAGTCGCTTACTTTCTACACAAGTAGGGGGAAGTTCGGTCCGTTCGGGGAGGAGATAGGGAACTTTTTCACGTCGACGACGACGGAGGGCAAAGTGGTTGGGTTCCATGGAAGAAGCAGCTTGTATTTGGATGCCATTGGAGTACACATGCAGCATTGGCTAGGAGGCCAAAGGGCATCCAAATCGTCTATGTTCAAATTGTTCTGA 1803 46.53 MNSDGSRKIKPISAGPFGGTGGNYWDDGVFSTIRQLVICHGAGIDSIKIQYDVKGSSIWSDKHGGNGGTKTDTVKLDFPDEYLTMIRGHYGSFVSFDKVYVRSLTFMSNKRKFGPYGVELGTIFSFPATEGKIVGFHGRSGLYLDAIGVYLKPMPIQTPSKGMIQSPNYVACKAESEGYSIIQGSVGQNYDIVLALRQKDEFKKPLPNTISKQVSSSSSSESSDDESTDKRPVKKGPSKVENAVPCGPWGGSGGTTFDDGHYSGIREINVSRNVGIVYIKVLYAWDEESIWGTRAGGKGGFKHDKVVFDYPYEILTHVTGHYGPVMYMGPNVIKSLTFHTTKAKYGPFGEALGTPFSTNVKEGKIVGFHGRKGLFLDALGVHLVEGKVTPASRPPSSEIVPAARPPLLGNELVPWTKKVAPSKGGALEEITRGVVKEPAPCGPGPWGGDGGKPWDDGVFSGIKQIYLTRSLEAFCSIQIEYDRNKQSVWSVKHGGNSGTSIHRVKLDYPHEVLTCISGYYGYVGKGERQQVIKSLTFYTSRGKFGPFGEEIGNFFTSTTTEGKVVGFHGRSSLYLDAIGVHMQHWLGGQRASKSSMFKLF 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1184654 1187396 - CmoCh05G002750.1 Cmo05g00275 382410

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00275 600 Pfam Jacalin-like lectin domain 22 153 IPR001229 -
Cmo05g00275 600 Pfam Jacalin-like lectin domain 451 583 IPR001229 -
Cmo05g00275 600 Pfam Jacalin-like lectin domain 254 383 IPR001229 -
Cmo05g00275 600 Gene3D - 2 151 IPR036404 -
Cmo05g00275 600 Gene3D - 435 583 IPR036404 -
Cmo05g00275 600 Gene3D - 233 384 IPR036404 -
Cmo05g00275 600 SUPERFAMILY Mannose-binding lectins 244 383 IPR036404 -
Cmo05g00275 600 CDD Jacalin 254 383 IPR033734 GO:0030246
Cmo05g00275 600 CDD Jacalin 22 152 IPR033734 GO:0030246
Cmo05g00275 600 ProSiteProfiles Jacalin-type lectin domain profile. 440 584 IPR001229 -
Cmo05g00275 600 PANTHER JACALIN-RELATED LECTIN 3 531 584 - -
Cmo05g00275 600 PANTHER BNAA06G13880D PROTEIN 29 524 - -
Cmo05g00275 600 PANTHER BNAA06G13880D PROTEIN 8 37 - -
Cmo05g00275 600 PANTHER JACALIN-RELATED LECTIN 3 29 524 - -
Cmo05g00275 600 MobiDBLite consensus disorder prediction 223 237 - -
Cmo05g00275 600 PANTHER BNAA06G13880D PROTEIN 531 584 - -
Cmo05g00275 600 PANTHER JACALIN-RELATED LECTIN 3 8 37 - -
Cmo05g00275 600 ProSiteProfiles Jacalin-type lectin domain profile. 243 385 IPR001229 -
Cmo05g00275 600 SUPERFAMILY Mannose-binding lectins 440 582 IPR036404 -
Cmo05g00275 600 MobiDBLite consensus disorder prediction 208 222 - -
Cmo05g00275 600 ProSiteProfiles Jacalin-type lectin domain profile. 11 153 IPR001229 -
Cmo05g00275 600 SMART Jacalin_2 22 153 IPR001229 -
Cmo05g00275 600 SMART Jacalin_2 451 584 IPR001229 -
Cmo05g00275 600 SMART Jacalin_2 254 385 IPR001229 -
Cmo05g00275 600 MobiDBLite consensus disorder prediction 207 252 - -
Cmo05g00275 600 CDD Jacalin 454 583 IPR033734 GO:0030246
Cmo05g00275 600 SUPERFAMILY Mannose-binding lectins 11 153 IPR036404 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00275 - - - cmos:111462963 1203.73
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00275 Cmo12g00391 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00275 Cmo-Chr5:1184654 Cmo09g00148 Cmo-Chr9:668644 1.59E-14 dispersed
Cmo01g01017 Cmo-Chr1:7743973 Cmo05g00275 Cmo-Chr5:1184654 2.20E-11 transposed
Cmo12g00391 Cmo-Chr12:2421232 Cmo05g00275 Cmo-Chr5:1184654 5.17E-27 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1012 Blo01g01579 . Bda01g00513 . . . . Bma01g02342 Cmo05g00275 Cmo12g00391 . . . Car12g00417 . . Cpe07g00395 . . . . . . . Cla08g01457 . . . . . . . Cone7ag1852 . . . . . Cme03g01921 . . . . . . . . Sed01g2548 . . Cma12g00440 Cma05g00270 . . Cpe11g00223 . Bhi09g02137 Tan01g4934 Cmetu04g1048 . . Mch11g0183 . . . . . . . . Lsi08g01363 Csa02g02090 Chy03g01425 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002824 2 1 2 2 1 2 2 2 2 1 1 2 3 1 1 3 2 2 3 2 2 2 2 1 0 1 1 2 3 2 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00275 Cmo_Chr05 FPKM 5.638869 7.03322 11.363537 10.405358 9.30545 9.7584 9.239054 0.0 0.0 0.0