Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00279 ATGTTGAAATCAAGCAAGCAAGTTAAAAGGTCCCCTTCAGCTTCCCATGCCACTTCTAGAAAGGGCTGTATGAGAGGCAAAGGAGGCCCTGAAAACGCTTCCTGCACTTATAAAGGCGTGCGCCAGAGGACATGGGGCAAATGGGTTGCTGAAATTCGAGAGCCCAATCGCGGGGCTCGTCTTTGGCTTGGCACGTTCGACACTTCCCATGATGCTGCTATGGCTTATGACAATGCCGCTAGGCGTCTTTATGGCTCTGAGGCTAAACTCAATCTCCCTCATCTTTCCCCCAATTTGCAGCTCCATAATCACCCTCTGCTTCTTCCTGGCTCTGTTTCCTCTTCCTCCGACAGTGCGGCTGCCACGGTGGAAGATGTCGGGTCCATCAGCTCAGCTCCCCATGACAACAGCAGCAGGATGAGATTTGGAGAGGAGGAGGAGGAGGAGATTGGGGGGCTTTGGAGATCGATGAGTATTAGCTTGGATGATTCCATTTGGGCTGAAGCAGCCATGTCTTTGGATTTTCCTGTCGTGGAAGATCGGGATCGTCAAGGCGTTTTTGCTGCTGATTTTGTGGATTCTAATGGATGGGATACTCTCCAATGGTTGTGTGAGTGTCCTGTTGGAATCATGGTCTAA 639 50.86 MLKSSKQVKRSPSASHATSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHDAAMAYDNAARRLYGSEAKLNLPHLSPNLQLHNHPLLLPGSVSSSSDSAAATVEDVGSISSAPHDNSSRMRFGEEEEEEIGGLWRSMSISLDDSIWAEAAMSLDFPVVEDRDRQGVFAADFVDSNGWDTLQWLCECPVGIMV 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1199948 1202020 + CmoCh05G002790.1 Cmo05g00279 382414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00279 212 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Cmo05g00279 212 MobiDBLite consensus disorder prediction 1 35 - -
Cmo05g00279 212 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 126 190 - -
Cmo05g00279 212 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 14 115 - -
Cmo05g00279 212 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 126 190 - -
Cmo05g00279 212 MobiDBLite consensus disorder prediction 119 137 - -
Cmo05g00279 212 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 14 115 - -
Cmo05g00279 212 Gene3D AP2/ERF domain 36 94 IPR036955 GO:0003700|GO:0006355
Cmo05g00279 212 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Cmo05g00279 212 MobiDBLite consensus disorder prediction 1 18 - -
Cmo05g00279 212 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Cmo05g00279 212 CDD AP2 35 95 IPR001471 GO:0003700|GO:0006355
Cmo05g00279 212 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Cmo05g00279 212 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Cmo05g00279 212 MobiDBLite consensus disorder prediction 119 143 - -
Cmo05g00279 212 SUPERFAMILY DNA-binding domain 36 94 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g02000 Cmo05g00279 CCT
Cmo05g00279 Cmo12g00388 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00335 Cmo-Chr3:4461152 Cmo05g00279 Cmo-Chr5:1199948 1.06E-32 dispersed
Cmo05g00279 Cmo-Chr5:1199948 Cmo06g00069 Cmo-Chr6:419387 1.61E-36 dispersed
Cmo01g02000 Cmo-Chr1:14118065 Cmo05g00279 Cmo-Chr5:1199948 8.71E-57 wgd
Cmo12g00388 Cmo-Chr12:2407396 Cmo05g00279 Cmo-Chr5:1199948 5.07E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9796 PF00847 AP2 2.40E-14 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00279 - - cpep:111805867 357.451