Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo05g00279 | ATGTTGAAATCAAGCAAGCAAGTTAAAAGGTCCCCTTCAGCTTCCCATGCCACTTCTAGAAAGGGCTGTATGAGAGGCAAAGGAGGCCCTGAAAACGCTTCCTGCACTTATAAAGGCGTGCGCCAGAGGACATGGGGCAAATGGGTTGCTGAAATTCGAGAGCCCAATCGCGGGGCTCGTCTTTGGCTTGGCACGTTCGACACTTCCCATGATGCTGCTATGGCTTATGACAATGCCGCTAGGCGTCTTTATGGCTCTGAGGCTAAACTCAATCTCCCTCATCTTTCCCCCAATTTGCAGCTCCATAATCACCCTCTGCTTCTTCCTGGCTCTGTTTCCTCTTCCTCCGACAGTGCGGCTGCCACGGTGGAAGATGTCGGGTCCATCAGCTCAGCTCCCCATGACAACAGCAGCAGGATGAGATTTGGAGAGGAGGAGGAGGAGGAGATTGGGGGGCTTTGGAGATCGATGAGTATTAGCTTGGATGATTCCATTTGGGCTGAAGCAGCCATGTCTTTGGATTTTCCTGTCGTGGAAGATCGGGATCGTCAAGGCGTTTTTGCTGCTGATTTTGTGGATTCTAATGGATGGGATACTCTCCAATGGTTGTGTGAGTGTCCTGTTGGAATCATGGTCTAA | 639 | 50.86 | MLKSSKQVKRSPSASHATSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHDAAMAYDNAARRLYGSEAKLNLPHLSPNLQLHNHPLLLPGSVSSSSDSAAATVEDVGSISSAPHDNSSRMRFGEEEEEEIGGLWRSMSISLDDSIWAEAAMSLDFPVVEDRDRQGVFAADFVDSNGWDTLQWLCECPVGIMV | 212 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1199948 | 1202020 | + | CmoCh05G002790.1 | Cmo05g00279 | 382414 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo05g00279 | 212 | ProSiteProfiles | AP2/ERF domain profile. | 36 | 93 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo05g00279 | 212 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Cmo05g00279 | 212 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D | 126 | 190 | - | - | |
Cmo05g00279 | 212 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D | 14 | 115 | - | - | |
Cmo05g00279 | 212 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 126 | 190 | - | - | |
Cmo05g00279 | 212 | MobiDBLite | consensus disorder prediction | 119 | 137 | - | - | |
Cmo05g00279 | 212 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 14 | 115 | - | - | |
Cmo05g00279 | 212 | Gene3D | AP2/ERF domain | 36 | 94 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo05g00279 | 212 | Pfam | AP2 domain | 36 | 85 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo05g00279 | 212 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Cmo05g00279 | 212 | SMART | rav1_2 | 36 | 99 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo05g00279 | 212 | CDD | AP2 | 35 | 95 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo05g00279 | 212 | PRINTS | Ethylene responsive element binding protein signature | 59 | 75 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo05g00279 | 212 | PRINTS | Ethylene responsive element binding protein signature | 37 | 48 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo05g00279 | 212 | MobiDBLite | consensus disorder prediction | 119 | 143 | - | - | |
Cmo05g00279 | 212 | SUPERFAMILY | DNA-binding domain | 36 | 94 | IPR016177 | GO:0003677 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo01g02000 | Cmo05g00279 | CCT | |
Cmo05g00279 | Cmo12g00388 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo03g00335 | Cmo-Chr3:4461152 | Cmo05g00279 | Cmo-Chr5:1199948 | 1.06E-32 | dispersed | |
Cmo05g00279 | Cmo-Chr5:1199948 | Cmo06g00069 | Cmo-Chr6:419387 | 1.61E-36 | dispersed | |
Cmo01g02000 | Cmo-Chr1:14118065 | Cmo05g00279 | Cmo-Chr5:1199948 | 8.71E-57 | wgd | |
Cmo12g00388 | Cmo-Chr12:2407396 | Cmo05g00279 | Cmo-Chr5:1199948 | 5.07E-79 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9796 | PF00847 | AP2 | 2.40E-14 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo05g00279 | - | - | cpep:111805867 | 357.451 |