Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00280 ATGGCAGACACAGGCTCCGTCTCCGACAGGAGAATGTCGTGTTCTATCCCCGAGAGGTTCCAGCTCCATGCTGCCATGCTGGCCCTGCAATTCGGCTATGCCGGCTTTCATGTCGTCTCTAGAGCTGCCCTCAATATGGGCATTAGTAAACTCGTCTTCCCTGTCTACCGAAACGTCATCGCTTTACTCCTCCTCCTTCCCTTCGCTTATTTCCTTGAAAAGAAGGATAGGCCTGCACTCACTCTTAACTTTGTCCTTCAGTTCTTCCTGCTCGCTCTCGTTGGAATTACAGCCAATCAAGGGTTTTACTTGCTGGGTTTGGATAATACTTCCCCAACCTTTGCTTCTGCTATTCAGAATTCTGTCCCTGCCATCACTTTCCTCATGGCTGCGCTTCTTAGGATTGAACAAGTGAGACTGAACCGGAAAGATGGGATAGCAAAGGTGATGGGGACTATATGTTGTGTGGCCGGAGCAACGGTGATCACATTATACAAAGGGCCGACCATCTACAGCCCAGCGACGACTGTGACGGTGGAGGGGACGGCGGAGACGGCAGGGATGCTGATGGGGCCAGGAATGTTCCCGTCACTAGGCGACGCAAAGGGCAAAAGCTGGACCTTAGGGTGCGTGTACTTGATCGGACACTGCTTGTCGTGGTCTGCGTGGCTAGTCTTGCAAGCACCGGTGCTGAAAAAATACCCAGCTCGCCTCTCCGTCACGTCCTTTACTTGCTTCTTTGGCCTCATCCAATTCTTCATTATCGCCGCCGTGTTCGAGCGCGACGCTCAGGCTTGGCTCTTCCACTCCGGCGCCGAAGCCTTTAGCATCGTTTATGCGGGGGTGGTGGCTTCGGGGATAGCGTTTGCCGTACAAATATGGTGCATTGACAGAGGTGGCCCGGTCTTCGTTGCTGTCTACCAACCGGTTCAGACCTTCGTTGTCGCTCTCATGGCTTCCTTCGCTTTGGGCGAGGAGTTCTACTTGGGAGGGATCATAGGAGCTGTGCTGATTATATCAGGACTGTACCTTGTATTGTGGGGCAAGAGCGAAGAAAAGAAGTTCTTATTGGAAAGGGCAGTGATCCAGTCTGTCCCGGACCATGGTACTCGCAGGCCAAGTGGCCACATCAAACCGTCTCTTAACCAGCCACTTCTTCATCCTACGGCTGACAGTGTTTGA 1182 52.79 MADTGSVSDRRMSCSIPERFQLHAAMLALQFGYAGFHVVSRAALNMGISKLVFPVYRNVIALLLLLPFAYFLEKKDRPALTLNFVLQFFLLALVGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAALLRIEQVRLNRKDGIAKVMGTICCVAGATVITLYKGPTIYSPATTVTVEGTAETAGMLMGPGMFPSLGDAKGKSWTLGCVYLIGHCLSWSAWLVLQAPVLKKYPARLSVTSFTCFFGLIQFFIIAAVFERDAQAWLFHSGAEAFSIVYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTFVVALMASFALGEEFYLGGIIGAVLIISGLYLVLWGKSEEKKFLLERAVIQSVPDHGTRRPSGHIKPSLNQPLLHPTADSV 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1203071 1205816 - CmoCh05G002800.1 Cmo05g00280 382415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00280 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 56 166 - -
Cmo05g00280 393 Pfam EamA-like transporter family 26 163 IPR000620 GO:0016020|GO:0016021
Cmo05g00280 393 Pfam EamA-like transporter family 208 346 IPR000620 GO:0016020|GO:0016021
Cmo05g00280 393 MobiDBLite consensus disorder prediction 366 393 - -
Cmo05g00280 393 PANTHER WAT1-RELATED PROTEIN 14 368 IPR030184 GO:0016021|GO:0022857
Cmo05g00280 393 PANTHER WAT1-RELATED PROTEIN 14 368 - -
Cmo05g00280 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 252 350 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00280 Cmo09g00123 CCT
Cmo05g00280 Cmo09g00123 ECH
Cmo05g00280 Cmo12g00386 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00280 Cmo-Chr5:1203071 Cmo15g01403 Cmo-Chr15:9545809 1.53E-81 dispersed
Cmo11g00300 Cmo-Chr11:1446008 Cmo05g00280 Cmo-Chr5:1203071 5.92E-139 transposed
Cmo12g00386 Cmo-Chr12:2398747 Cmo05g00280 Cmo-Chr5:1203071 0 wgd
Cmo05g00280 Cmo-Chr5:1203071 Cmo09g00123 Cmo-Chr9:572730 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00280 - - csv:101210562 711.835