Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00282 ATGAACAGAGGAATTATATTGAGCTACTTCAAAGCAAAATTCTTTGGAGAAAACATTAACATCTGGTACCAATTTGTTCCACAGATGATTTTCATGAACAGTTTATGCGGTTACCTCTCACTTCTCATAATTGTAACGTGGTGCTCTGGATCTCAAGCTCTGTATCACGTAATGATCTATATAGGCGAAAACCAGCTTTTTCCAGGACAGAAGTTCCTTCAGCTTATACATTCCGTAGAGTTCGTACCTGGTGCAGTTTCTAAAACAGCATCCTTTCTACGTCTATGGGCCCTCAGGTCCAAATTTCTTTCACTCAGCCAAGCGCATTCGGAGTTCTTGAGTGTATTTTACGACAAGGTTCTACTCCTAGCTTGGGGGTTCAATAGTTTGATCATCCGAATGGTGTAG 408 40.93 MNRGIILSYFKAKFFGENINIWYQFVPQMIFMNSLCGYLSLLIIVTWCSGSQALYHVMIYIGENQLFPGQKFLQLIHSVEFVPGAVSKTASFLRLWALRSKFLSLSQAHSEFLSVFYDKVLLLAWGFNSLIIRMV 135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1227643 1229441 - CmoCh05G002820.1 Cmo05g00282 382417

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00282 135 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 74 135 - -
Cmo05g00282 135 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 1 76 - -
Cmo05g00282 135 PANTHER VACUOLAR PROTON ATPASES 74 135 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cmo05g00282 135 PANTHER VACUOLAR PROTON ATPASES 1 76 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cmo05g00282 135 Pfam V-type ATPase 116kDa subunit family 74 125 IPR002490 GO:0033179|GO:0046961|GO:1902600
Cmo05g00282 135 Pfam V-type ATPase 116kDa subunit family 1 74 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00282 K02154 ATPeV0A, ATP6N; V-type H+-transporting ATPase subunit a - csv:101209817 129.028
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00282 Cmo12g00383 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00282 Cmo-Chr5:1227643 Cmo20g00495 Cmo-Chr20:2343070 5.45E-18 dispersed
Cmo12g00383 Cmo-Chr12:2370897 Cmo05g00282 Cmo-Chr5:1227643 3.94E-38 wgd
Cmo19g00696 Cmo-Chr19:7351871 Cmo05g00282 Cmo-Chr5:1227643 5.73E-16 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1033 . . . . . . . . Cmo05g00282 Cmo12g00383 . . . Car12g00408 . . Cpe07g00387 Bhi04g00220 . . . . . . Cla08g01448 Cam08g1932 Cec08g1506 Cco08g1644 Clacu08g1622 . Cre08g1408 . . Cone17ag1375 Cone20ag0107 . . . Cme03g01909 Blo17g00765 . Bda08g01248 . . Bpe05g00122 . Bma05g00148 . . . Cma12g00431 Cma05g00279 Car05g00230 . Cpe11g00231 . . . . . . . . . . . . . . . Lsi08g01352 Csa02g02102 Chy03g01413 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000455 4 5 5 3 4 3 5 3 3 3 3 3 6 3 3 5 3 6 6 3 3 3 3 3 3 3 3 7 4 4 115
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00282 Cmo_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0