Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00287 ATGGCTGGGTTCTTCTATCTAGGAGGAGGGAGAGAAGGCCCACCAAACAAACAAGAAGAAGAAGAAGAAAGAGAACAAAACTTGTTTATGTATAGAAATGAAGAGATCTACAACAAGGGTTTCGAGATATGGCCTCAACAATACACCAATCATCACCAGAATCCTTCTCTTACAGACCATTTATCCTTCGGCGTTGGTCCCAGCCGCCGCAGCTTCATGATCAACGACTCCGATGAGCCATCCAGATCAGCCTTCACCGTCATGCGCCCTGCCGCTGCCTTTGCCGCATCTGCTGCCGCTGCCGCTGGTGGAGGCATGAATTGTCAAGACTGTGGCAACCAAGCTAAGAAGGACTGCGCTTATTTGCGGTGTAGGACTTGCTGTAAGAGCCGCGGCTTTCAGTGTCAGACCCATGTCAAAAGCACTTGGGTTCCGGCTGCTAAACGCCGTGAGCGGCAGCAGCAAATTGCTGCTTTACAACAACAACAGCAACAAGAGCAGTTTCGTGGCGGAGAGAATTCTAAACGACAGAGAGAAACTCAGATTACCACCGCTGTCTCCGCCGCCACCGCCTCCGCCACCGCTTGCCCTCGTTTGCCCTCCATCACGTCAGGGTTAGAACTGGCGCAATTTCCATCAGAAGTGAACTCACCGGCGGTATTTCGGTGCGTAAAAGTAAGCGCAATGGACGATGCAGATGAAGAGTTTGCATATCAGACGGCTGTGAACATCGGTGGTCATGTGTTCAAAGGAATTCTCTACGATCAAGGTCCTGAAGTCCGTTACACCGCAGCCGGTGAAAGCTCCTCCGGCCACGGCGGAGATGGATCAACACACCCACTTAACCTAATTGCCGGATCCTCCAACCCCGGACCCACTTCCGCATCTACCTCCGCCGCAACTAGTACCAACCCCTCCGCCGCCGCCGCCCCGTTGCTCGACCCTACGATATATCCAGCTCCTCTCAATGCATTCATGGCTGGTACGCAGTTCTTCCCACCCTCAAGGTCATGA 1014 53.06 MAGFFYLGGGREGPPNKQEEEEEREQNLFMYRNEEIYNKGFEIWPQQYTNHHQNPSLTDHLSFGVGPSRRSFMINDSDEPSRSAFTVMRPAAAFAASAAAAAGGGMNCQDCGNQAKKDCAYLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQIAALQQQQQQEQFRGGENSKRQRETQITTAVSAATASATACPRLPSITSGLELAQFPSEVNSPAVFRCVKVSAMDDADEEFAYQTAVNIGGHVFKGILYDQGPEVRYTAAGESSSGHGGDGSTHPLNLIAGSSNPGPTSASTSAATSTNPSAAAAPLLDPTIYPAPLNAFMAGTQFFPPSRS 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1245268 1246672 - CmoCh05G002870.1 Cmo05g00287 382422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00287 337 Pfam Domain of unknown function (DUF702) 105 259 - -
Cmo05g00287 337 PANTHER PROTEIN SHI RELATED SEQUENCE 7 1 334 - -
Cmo05g00287 337 MobiDBLite consensus disorder prediction 270 306 - -
Cmo05g00287 337 MobiDBLite consensus disorder prediction 263 306 - -
Cmo05g00287 337 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 334 IPR007818 GO:0003700|GO:0006355
Cmo05g00287 337 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 210 258 IPR006511 -
Cmo05g00287 337 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 107 149 IPR006510 -
Cmo05g00287 337 MobiDBLite consensus disorder prediction 1 23 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g02001 Cmo05g00287 CCT
Cmo01g02001 Cmo05g00287 ECH
Cmo05g00287 Cmo12g00381 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00287 Cmo-Chr5:1245268 Cmo19g00311 Cmo-Chr19:2339193 3.63E-94 dispersed
Cmo01g02001 Cmo-Chr1:14124980 Cmo05g00287 Cmo-Chr5:1245268 6.01E-90 wgd
Cmo12g00381 Cmo-Chr12:2364323 Cmo05g00287 Cmo-Chr5:1245268 4.00E-116 wgd
Cmo03g00734 Cmo-Chr3:6254612 Cmo05g00287 Cmo-Chr5:1245268 1.03E-81 wgd
Cmo05g00287 Cmo-Chr5:1245268 Cmo07g00450 Cmo-Chr7:2060308 1.40E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9797 PF05142 DUF702 1.00E-67 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00287 - - cmo:103488016 511.146