Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo05g00287 | ATGGCTGGGTTCTTCTATCTAGGAGGAGGGAGAGAAGGCCCACCAAACAAACAAGAAGAAGAAGAAGAAAGAGAACAAAACTTGTTTATGTATAGAAATGAAGAGATCTACAACAAGGGTTTCGAGATATGGCCTCAACAATACACCAATCATCACCAGAATCCTTCTCTTACAGACCATTTATCCTTCGGCGTTGGTCCCAGCCGCCGCAGCTTCATGATCAACGACTCCGATGAGCCATCCAGATCAGCCTTCACCGTCATGCGCCCTGCCGCTGCCTTTGCCGCATCTGCTGCCGCTGCCGCTGGTGGAGGCATGAATTGTCAAGACTGTGGCAACCAAGCTAAGAAGGACTGCGCTTATTTGCGGTGTAGGACTTGCTGTAAGAGCCGCGGCTTTCAGTGTCAGACCCATGTCAAAAGCACTTGGGTTCCGGCTGCTAAACGCCGTGAGCGGCAGCAGCAAATTGCTGCTTTACAACAACAACAGCAACAAGAGCAGTTTCGTGGCGGAGAGAATTCTAAACGACAGAGAGAAACTCAGATTACCACCGCTGTCTCCGCCGCCACCGCCTCCGCCACCGCTTGCCCTCGTTTGCCCTCCATCACGTCAGGGTTAGAACTGGCGCAATTTCCATCAGAAGTGAACTCACCGGCGGTATTTCGGTGCGTAAAAGTAAGCGCAATGGACGATGCAGATGAAGAGTTTGCATATCAGACGGCTGTGAACATCGGTGGTCATGTGTTCAAAGGAATTCTCTACGATCAAGGTCCTGAAGTCCGTTACACCGCAGCCGGTGAAAGCTCCTCCGGCCACGGCGGAGATGGATCAACACACCCACTTAACCTAATTGCCGGATCCTCCAACCCCGGACCCACTTCCGCATCTACCTCCGCCGCAACTAGTACCAACCCCTCCGCCGCCGCCGCCCCGTTGCTCGACCCTACGATATATCCAGCTCCTCTCAATGCATTCATGGCTGGTACGCAGTTCTTCCCACCCTCAAGGTCATGA | 1014 | 53.06 | MAGFFYLGGGREGPPNKQEEEEEREQNLFMYRNEEIYNKGFEIWPQQYTNHHQNPSLTDHLSFGVGPSRRSFMINDSDEPSRSAFTVMRPAAAFAASAAAAAGGGMNCQDCGNQAKKDCAYLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQIAALQQQQQQEQFRGGENSKRQRETQITTAVSAATASATACPRLPSITSGLELAQFPSEVNSPAVFRCVKVSAMDDADEEFAYQTAVNIGGHVFKGILYDQGPEVRYTAAGESSSGHGGDGSTHPLNLIAGSSNPGPTSASTSAATSTNPSAAAAPLLDPTIYPAPLNAFMAGTQFFPPSRS | 337 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1245268 | 1246672 | - | CmoCh05G002870.1 | Cmo05g00287 | 382422 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo05g00287 | 337 | Pfam | Domain of unknown function (DUF702) | 105 | 259 | - | - | |
Cmo05g00287 | 337 | PANTHER | PROTEIN SHI RELATED SEQUENCE 7 | 1 | 334 | - | - | |
Cmo05g00287 | 337 | MobiDBLite | consensus disorder prediction | 270 | 306 | - | - | |
Cmo05g00287 | 337 | MobiDBLite | consensus disorder prediction | 263 | 306 | - | - | |
Cmo05g00287 | 337 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 1 | 334 | IPR007818 | GO:0003700|GO:0006355 | |
Cmo05g00287 | 337 | TIGRFAM | LRP1_Cterm: LRP1 C-terminal domain | 210 | 258 | IPR006511 | - | |
Cmo05g00287 | 337 | TIGRFAM | put_zinc_LRP1: putative zinc finger domain, LRP1 type | 107 | 149 | IPR006510 | - | |
Cmo05g00287 | 337 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo01g02001 | Cmo05g00287 | CCT | |
Cmo01g02001 | Cmo05g00287 | ECH | |
Cmo05g00287 | Cmo12g00381 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g00287 | Cmo-Chr5:1245268 | Cmo19g00311 | Cmo-Chr19:2339193 | 3.63E-94 | dispersed | |
Cmo01g02001 | Cmo-Chr1:14124980 | Cmo05g00287 | Cmo-Chr5:1245268 | 6.01E-90 | wgd | |
Cmo12g00381 | Cmo-Chr12:2364323 | Cmo05g00287 | Cmo-Chr5:1245268 | 4.00E-116 | wgd | |
Cmo03g00734 | Cmo-Chr3:6254612 | Cmo05g00287 | Cmo-Chr5:1245268 | 1.03E-81 | wgd | |
Cmo05g00287 | Cmo-Chr5:1245268 | Cmo07g00450 | Cmo-Chr7:2060308 | 1.40E-71 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9797 | PF05142 | DUF702 | 1.00E-67 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo05g00287 | - | - | cmo:103488016 | 511.146 |