Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00289 ATGAAGATTCTGTGTGATGTCTGTGAAAATGCGGAAGCGGTGGTGTTCTGCACGGCGGACGAGGCGGCGCTCTGTAATTTATGCGATCACCGTGTCCACAATGCTAATAAGCTCGCTTCGAAGCACCGCCGCTTTTCTCTGCTCCGCTCTGATGCGGCGGAGGCCCCCGTCTGCGATGTGTGCCGGGAGCGGCGAGGGTTCTTGTTCTGTCAGCAGGATAGAGCGATTCTGTGTAGAGAATGCGATGATCCAATTCATTCGGCCAACGAACTCACTATGAAGCACGATAGGTTTCTTCAGATTGGGATTAAGCTTTCCGCCACCGCTACTCTGTACGAACCGCCTCCCTCCGGGGAGAAACTGATCGGGAGTGGTGGTTGTGTTGTTTCTAAATCGAAGTTAAAGGGCTCTGTCAAGAAGGCGGCTGCTGTTTCTAGTGCTCCAACGGTATGCACAACAAGTGTTTGTGTAAATGCCCCAACGAACTTAACTCCGACGACAGCCGTGAATGAGGGCGGCGGAGGTCAGATTGCGACTGAGGGCGGTGGATCAGCTAGTAGCATATCGGAATATTTGATGGAGACGCTTCCTGGGTGGCCATTTGAAGAGTTTCTTGAGTTTGAAGGGGTGGGGTTTCCATTGTCATCATGGGAAGGCTTGGAGCCTTGGGTCCCTCAGGGGCCACCAGCGGCGCTGTTTGGGTTGAAGGACACGAAGGCATTGGTAGTGAATTCATCAAAAGTGAATAGAGTGTGGACAGACGATGGTTTCACTGTGCCACAGATTATTAGTACAACCCCATCTGCAGGGTTTAAGGGGTCCAGACCTTTTTCATAA 837 51.97 MKILCDVCENAEAVVFCTADEAALCNLCDHRVHNANKLASKHRRFSLLRSDAAEAPVCDVCRERRGFLFCQQDRAILCRECDDPIHSANELTMKHDRFLQIGIKLSATATLYEPPPSGEKLIGSGGCVVSKSKLKGSVKKAAAVSSAPTVCTTSVCVNAPTNLTPTTAVNEGGGGQIATEGGGSASSISEYLMETLPGWPFEEFLEFEGVGFPLSSWEGLEPWVPQGPPAALFGLKDTKALVVNSSKVNRVWTDDGFTVPQIISTTPSAGFKGSRPFS 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1251990 1253492 + CmoCh05G002890.1 Cmo05g00289 382424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00289 278 CDD Bbox1_BBX-like 4 47 - -
Cmo05g00289 278 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cmo05g00289 278 Gene3D Classic Zinc Finger 1 94 - -
Cmo05g00289 278 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 207 - -
Cmo05g00289 278 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Cmo05g00289 278 Pfam B-box zinc finger 54 96 IPR000315 GO:0008270
Cmo05g00289 278 CDD Bbox1_BBX-like 57 99 - -
Cmo05g00289 278 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Cmo05g00289 278 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 207 - -
Cmo05g00289 278 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cmo05g00289 278 SMART bboxneu5 53 100 IPR000315 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g02006 Cmo05g00289 CCT
Cmo01g02006 Cmo05g00289 ECH
Cmo05g00289 Cmo12g00380 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00289 Cmo-Chr5:1251990 Cmo11g01107 Cmo-Chr11:6193606 1.40E-54 dispersed
Cmo01g02006 Cmo-Chr1:14141132 Cmo05g00289 Cmo-Chr5:1251990 8.88E-56 wgd
Cmo12g00380 Cmo-Chr12:2352746 Cmo05g00289 Cmo-Chr5:1251990 1.21E-141 wgd
Cmo19g00699 Cmo-Chr19:7382490 Cmo05g00289 Cmo-Chr5:1251990 1.94E-26 wgd
Cmo05g00289 Cmo-Chr5:1251990 Cmo07g00440 Cmo-Chr7:2026405 1.11E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9798 PF00643 zf-B_box 1.70E-05 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00289 - - cmax:111492300 484.567