Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00292 ATGACCATAAATCGTCTGCGAATTTCGAGCTCATTTGCGAAGATGGCTGAGGAGATCAGTAAGGCAGAACTCAGAACTGCCACTTCTGCGGCAGAGAAGGCGCAATCGAGATCTCTTTGGCCCTCTGTTCTCCGTTGGATTCCCACGTCCACCGATCATATCATCGCCGCCGAGAAGCGACTTCTCTCTCTTGTCAAAACTCCCTATGTCCAAGAACGGGTTAACATTGGTTCTGGCCCGCCAGGAACGAAAACTAGGTGGTTTTGTTCTTCGAGTGATGAGCCTAGATATATCAACACCGTGACATTCGAAAGCAAAGCTGAGTCTCCGACTCTTGTAATGATTCATGGTTATGCTGCTTCTCAAGGGTTCTTCTTCCGGAATTTTGATGCTCTTGCCAGTCGCTTCCGGGTCATTGCCGTCGATCAACTTGGGTGGGGAGGGTCTAGCAGGCCCGATTTTACATGCAAAAGCACAGAAGAAACTGAAGCATGGTTTATAGATTCTTTTGAGGAGTGGCGAAAAGCAAAAAGCATCAGCAATTTTGTTTTACTTGGACACTCATTTGGTGGATATGTTGCGGCTAAATATGCTCTCAAGCATCCTGAGCACGTCAAGCACCTAATTCTAGTTGGACCTGCTGGATTTTCTTCAGAGTCAGAGGCCAAGTCTGAGCGGCTTACACAGTTTAGAGCTACTTGGAAAGGAGCGGTTTTGAATCATTTGTGGGAGTCAAATTTTACTCCACAGAAGCTTATTAGAGGTTTGGGCCCTTGGGGTCCAGATCTTGTTCGCAAATATACAAGTTCGAGGTTCGGGACATACTCAATTGGGGACATATTGAATGATGAAGAATCCAGATTGTTATCAGCTAAGGCTAGTGGAGAATTGTGCTTGAAATACATATTTGCATTTGGTGCGTTTGCTCGGATGCCACTTCTACAGAGGGCATCCGAATGGAAAGTTCCTACAACATTTATATACGGTTATGAAGATTGGATGAACTATCAAGGCGCTCAAGAAGCTCGCAGAAGTATGAACACACCGTGCGAAATACTACGCGTTCCTCAGGCTGGTCACTTTGTGTTCATAGACAGCCCTAGCAGTTTTCACTCGTCAGTGTTCTACGCGTGCCGAAGATTCCTCTCTCCCGAACCCGAGAAAGAATCCTTGCCAGAAGAGATCACTGAAGAAGAAGAAACCTTGTCTTCGCTCCGCCGGAGAATACGCATTCCGATGGAAACAATGTCGAGCTACATAACCACTGGTCTTTACAGCCGCTCACCTTTCACATTTCCACGCCTTAAACCACGACGTCTCAACCACTCCGGCGGGAGTAGCGTCTCCGTAAACTGCGTTGCTAGCAAATGGGCTGAGCGACTACTTGGAGATTTTCAATTCCTCTCCGGTTCCTCCTCCACCGTCACTCTCTCTCCTTCTTTCCCTCCTTATATTGCCTCCCCCGAGCGCCATGTTACAATCCCCATCGATTTCTATCGAGTTCTTGGAGCTGAGACGCATATTATTGGGGATGGGATTTGTAGAGCTTACGAAGCTAGAGTTTCGAAGCCGCCGCAGTATAGGTTTAGCCAGGAGACTCTGATTAGTCGCCGGCAGATTCTTCAGGCAGCTTGCGAAACCTTGGCGGATCATACTTTGCGAAGAGAGTACAATAAAGGCCTTTCGGAAGATGAAGACGGTACTGTTCTCACGCAAGTTCCTTTCGATAAGGTTCCTGGTGCTTTGTGTCTGTTGCAAGAAGCTGGAGAGACAGCATTGGTTCTTGAAATTGGAGAGAGCTTGCTTAAAGAGAGGCTGCCAAAGTCATTCAAGCAAGATATCATCCTGGCCATGGCTCTTGCTTATGTTGACATATCAAGGGATGCTATGGCATTATCTCCTCCTGATTTTATTCAGGGCTGCAAAGTGCTCGAGAGGGCTGCCGAGTTGTTGCAGGAGGAAAGTGCTAGTAGTCTTGCACCTAATTTGCTTTCACAAATTGATGAGACATTGGAAGAGATCACACCTCGATGTGTTCTGGAACTGTTGGCTTTGCCTCTCGATAATGAGTGGCGAAAAAGAAGGGAAGAGGGTCTTCATGGCGTGCGCAATATTTTGTGGGCTGTTGGAGATGGGGGAGCAACAGCTATTGCTGGTGGATTCACCCGTGAAGACTTTATGAATGAGGCATTTGAACGAATGACAGCATCTGAGCAGGTTGATCTCTTTGTAGCTACACCAACAAATATTCCTGCAGAACGTTTTGAAGTGTATGGAGTGGCACTTGCACTCGTGGCACAAGCCTTCGTTGGCAGAAAACCGCACCTTATCCAAGATGCTGACGACCTCTTCCAACAACTTCAGCAAACTAAGGAAGCTGTTGTTGGGACTGCTGTCACAGGATATGCACCTCGCAAGGTTCATTTTTTCCTTGAAAGGGGGCTATGTTCCTTACTTTGTGGAGAACTTGACGAGTGTCGATCATGGCTGGGCCTAGACAGTGAGACTTCACCTTACAGAAATCCAGCTATTGTAGATCATATTCTAAATAATTCTGAAAATGATCTTCCGGGGCTATGTAAGCTGTTGGAGATGTGGTTAGCAGAAGTGGTGTTCTCCAGATTTAGAGACACGAAAGACATTTATTTTAAGCTTGGAGATTACTACGATGATCCCACTGTTTTGAGGTACTTAGAGAAACTGGAAGGAGTTAATGGTTCACCACTAGCTGCAGCAGCAGCTATAGTGAAGATTGGTGCTGAGGCTACTGCAGTTCTTGATCATGTGAAATCCAGTGCTATTCAAGCACTGCGGAAGGTGTTTCCCCTTGGTCAGAACAGTTTTAGGCGTGAGGCAGATGCGGAAACGGAATATATTTTTCCTGCTGTAAATAGTCAGGTGCCTTTAGTGAGCTTTGATGAGAATGAGAATGAACGTACCAACTTATCTGAGGTTTCTGAGAGAGCTAAAGCTGGCGAAATAAATGATGAAAAACCAATTACTGATCAAATTAAAGATGCAAGTGTGAAGATCATGTGTGCTGGTTTGGCAGTTGGGTTGGTGACTTTGGCTTGTTTGAGGTTCTTACCTGCTAGAATTAGCACAACTTCTCTACTTAAAGAAGCTGGTTCTTCTAGCGCATCAACTACCAGTGTAGCATCTGAAGTTGAAAATTCCAGCGAGGAGTCGTCTAGAATGGATGCACGGATTGCAGAAGGTCTAGTTCGCAAATGGCAGAGCATTAAGTCTCTGGCTTTTGGACCTGATCATTGCCTAGAAAAACTACAAGAGATATTAGATGGTGAGATGTTGAAGATCTGGACGGATCGTGCAATCGAAATTTCAGAAATCGGTTGGTTCTATGACTACACACTCTCGAATCTAACCATTGACAGTGTAACAGTATCTTTAGATGGCCGGCGTGCCATGGTGGAAGCAACTCTTGAAGAATCAGCTCATCTCATTGATGTAGGCCATCCAGAACACAATGACTCACACAGAAAAACCTATACAACAAGATATGAGATGTCATATTCCAGTTCTGGATGGAAAATTTCCAAAGGTGCCGTTCTTGAATCTTAA 3582 45.62 MTINRLRISSSFAKMAEEISKAELRTATSAAEKAQSRSLWPSVLRWIPTSTDHIIAAEKRLLSLVKTPYVQERVNIGSGPPGTKTRWFCSSSDEPRYINTVTFESKAESPTLVMIHGYAASQGFFFRNFDALASRFRVIAVDQLGWGGSSRPDFTCKSTEETEAWFIDSFEEWRKAKSISNFVLLGHSFGGYVAAKYALKHPEHVKHLILVGPAGFSSESEAKSERLTQFRATWKGAVLNHLWESNFTPQKLIRGLGPWGPDLVRKYTSSRFGTYSIGDILNDEESRLLSAKASGELCLKYIFAFGAFARMPLLQRASEWKVPTTFIYGYEDWMNYQGAQEARRSMNTPCEILRVPQAGHFVFIDSPSSFHSSVFYACRRFLSPEPEKESLPEEITEEEETLSSLRRRIRIPMETMSSYITTGLYSRSPFTFPRLKPRRLNHSGGSSVSVNCVASKWAERLLGDFQFLSGSSSTVTLSPSFPPYIASPERHVTIPIDFYRVLGAETHIIGDGICRAYEARVSKPPQYRFSQETLISRRQILQAACETLADHTLRREYNKGLSEDEDGTVLTQVPFDKVPGALCLLQEAGETALVLEIGESLLKERLPKSFKQDIILAMALAYVDISRDAMALSPPDFIQGCKVLERAAELLQEESASSLAPNLLSQIDETLEEITPRCVLELLALPLDNEWRKRREEGLHGVRNILWAVGDGGATAIAGGFTREDFMNEAFERMTASEQVDLFVATPTNIPAERFEVYGVALALVAQAFVGRKPHLIQDADDLFQQLQQTKEAVVGTAVTGYAPRKVHFFLERGLCSLLCGELDECRSWLGLDSETSPYRNPAIVDHILNNSENDLPGLCKLLEMWLAEVVFSRFRDTKDIYFKLGDYYDDPTVLRYLEKLEGVNGSPLAAAAAIVKIGAEATAVLDHVKSSAIQALRKVFPLGQNSFRREADAETEYIFPAVNSQVPLVSFDENENERTNLSEVSERAKAGEINDEKPITDQIKDASVKIMCAGLAVGLVTLACLRFLPARISTTSLLKEAGSSSASTTSVASEVENSSEESSRMDARIAEGLVRKWQSIKSLAFGPDHCLEKLQEILDGEMLKIWTDRAIEISEIGWFYDYTLSNLTIDSVTVSLDGRRAMVEATLEESAHLIDVGHPEHNDSHRKTYTTRYEMSYSSSGWKISKGAVLES 1193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1263148 1272958 - CmoCh05G002920.1 Cmo05g00292 382427

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00292 1193 PANTHER PLASTID DIVISION PROTEIN CDP1, CHLOROPLASTIC-RELATED 437 1191 IPR044685 -
Cmo05g00292 1193 Pfam ARC6-like, IMS domain 1071 1186 IPR025344 -
Cmo05g00292 1193 PRINTS Alpha/beta hydrolase fold signature 135 150 IPR000073 -
Cmo05g00292 1193 PRINTS Alpha/beta hydrolase fold signature 198 211 IPR000073 -
Cmo05g00292 1193 PRINTS Alpha/beta hydrolase fold signature 184 197 IPR000073 -
Cmo05g00292 1193 SUPERFAMILY alpha/beta-Hydrolases 102 372 IPR029058 -
Cmo05g00292 1193 Gene3D alpha/beta hydrolase 96 378 IPR029058 -
Cmo05g00292 1193 Pfam alpha/beta hydrolase fold 110 366 IPR000073 -
Cmo05g00292 1193 PRINTS Epoxide hydrolase signature 135 150 IPR000639 GO:0003824
Cmo05g00292 1193 PRINTS Epoxide hydrolase signature 355 377 IPR000639 GO:0003824
Cmo05g00292 1193 PRINTS Epoxide hydrolase signature 322 338 IPR000639 GO:0003824
Cmo05g00292 1193 PRINTS Epoxide hydrolase signature 198 211 IPR000639 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00292 - - - csv:101212436 1293.87
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g00292 Cmo12g00376 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00951 Cmo-Chr2:5818406 Cmo05g00292 Cmo-Chr5:1263148 4.39E-09 dispersed
Cmo05g00292 Cmo-Chr5:1263148 Cmo09g01190 Cmo-Chr9:8716476 8.39E-08 dispersed
Cmo12g00377 Cmo-Chr12:2332379 Cmo05g00292 Cmo-Chr5:1263148 0 transposed
Cmo12g00376 Cmo-Chr12:2327558 Cmo05g00292 Cmo-Chr5:1263148 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1048 . . . . . . . . Cmo05g00292 Cmo12g00376 . . . Car12g00402 . . Cpe07g00381 Bhi04g00231 . . . Hepe10g0128 . . Cla08g01442 Cam08g1923 Cec08g1498 Cco08g1634 Clacu08g1613 . Cre08g1399 . . Cone17ag1385 Cone20ag0096 . . . Cme03g01901 Blo17g00754 Blo18g00786 Bda08g01233 Bda01g01523 Bpe02g01720 Bpe05g00128 Bma01g00736 Bma05g00154 . . . Cma12g00426 Cma05g00286 Car05g00236 . Cpe11g00237 . . . . . . . . . . . . . . . Lsi08g01344 Csa02g02111 Chy03g01405 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007804 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00292 Cmo_Chr05 FPKM 9.180616 9.739816 5.761737 5.410247 8.244091 7.782468 9.168879 6.749922 7.191795 7.31694