Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00293 ATGTCGTCAACGTTTAGCGGTGATGAAACGGCACCCTTCTTTGGCTTCCTCGGCGCTGCTGCGGCCCTGGTTTTCTCCTGTATGGGAGCCGCTTACGGCACGGCGAAGAGCGGGGTTGGAGTGGCGTCAATGGGAGTGATGAGGCCGGAATTGGTGATGAAGTCGATTGTTCCGGTGGTTATGGCGGGAGTTTTGGGTATTTATGGTTTGATTATTGCTGTGATTATTAGTACGGGGATTAACCCGAAGGCTAAATCTTATTACCTCTTCGATGGTTACGCCCATCTCTCCTCTGGTCTTGCTTGCGGTCTCGCCGGTCTCTCTGCTGGTATGGCTATCGGCATCGTCGGCGATGCGGGCGTTAGGTACTCCATTTTACATTTGTTATTAGAATCTGTGTCCCCATGTTCAAGTAGAGGATCATTTGGTTTTGAATTGGGTTGCCTACTTGCTTCCACAGTTTACAACGAATTTGTTTCCAGCAGTTGTTTAGTGCCTTCTTGTGAATAG 510 49.41 MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYSILHLLLESVSPCSSRGSFGFELGCLLASTVYNEFVSSSCLVPSCE 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1273932 1276157 - CmoCh05G002930.1 Cmo05g00293 382428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00293 169 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 80 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cmo05g00293 169 PRINTS Vacuolar ATP synthase 16kDa subunit signature 30 54 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cmo05g00293 169 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 133 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cmo05g00293 169 Pfam ATP synthase subunit C 17 76 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cmo05g00293 169 SUPERFAMILY F1F0 ATP synthase subunit C 14 77 IPR035921 -
Cmo05g00293 169 PANTHER V-TYPE PROTON ATPASE SUBUNIT C3 3 125 - -
Cmo05g00293 169 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 125 - -
Cmo05g00293 169 Gene3D - 11 126 IPR035921 -
Cmo05g00293 169 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 13 121 IPR011555 GO:0033179|GO:0046961|GO:1902600
Cmo05g00293 169 CDD ATP-synt_Vo_c_ATP6C_rpt1 13 80 - -
Cmo05g00293 169 SUPERFAMILY F1F0 ATP synthase subunit C 87 122 IPR035921 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00293 Cmo12g00375 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00293 Cmo-Chr5:1273932 Cmo09g00788 Cmo-Chr9:4028195 1.82E-80 dispersed
Cmo05g00293 Cmo-Chr5:1273932 Cmo05g00294 Cmo-Chr5:1278471 1.85E-77 tandem
Cmo12g00374 Cmo-Chr12:2318825 Cmo05g00293 Cmo-Chr5:1273932 1.01E-79 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00293 K02155 - csin:114292490 219.935