Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo05g00293 | ATGTCGTCAACGTTTAGCGGTGATGAAACGGCACCCTTCTTTGGCTTCCTCGGCGCTGCTGCGGCCCTGGTTTTCTCCTGTATGGGAGCCGCTTACGGCACGGCGAAGAGCGGGGTTGGAGTGGCGTCAATGGGAGTGATGAGGCCGGAATTGGTGATGAAGTCGATTGTTCCGGTGGTTATGGCGGGAGTTTTGGGTATTTATGGTTTGATTATTGCTGTGATTATTAGTACGGGGATTAACCCGAAGGCTAAATCTTATTACCTCTTCGATGGTTACGCCCATCTCTCCTCTGGTCTTGCTTGCGGTCTCGCCGGTCTCTCTGCTGGTATGGCTATCGGCATCGTCGGCGATGCGGGCGTTAGGTACTCCATTTTACATTTGTTATTAGAATCTGTGTCCCCATGTTCAAGTAGAGGATCATTTGGTTTTGAATTGGGTTGCCTACTTGCTTCCACAGTTTACAACGAATTTGTTTCCAGCAGTTGTTTAGTGCCTTCTTGTGAATAG | 510 | 49.41 | MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRYSILHLLLESVSPCSSRGSFGFELGCLLASTVYNEFVSSSCLVPSCE | 169 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1273932 | 1276157 | - | CmoCh05G002930.1 | Cmo05g00293 | 382428 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo05g00293 | 169 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 56 | 80 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 | |
Cmo05g00293 | 169 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 30 | 54 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 | |
Cmo05g00293 | 169 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 107 | 133 | IPR000245 | GO:0033179|GO:0046961|GO:1902600 | |
Cmo05g00293 | 169 | Pfam | ATP synthase subunit C | 17 | 76 | IPR002379 | GO:0015078|GO:0033177|GO:1902600 | |
Cmo05g00293 | 169 | SUPERFAMILY | F1F0 ATP synthase subunit C | 14 | 77 | IPR035921 | - | |
Cmo05g00293 | 169 | PANTHER | V-TYPE PROTON ATPASE SUBUNIT C3 | 3 | 125 | - | - | |
Cmo05g00293 | 169 | PANTHER | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT | 3 | 125 | - | - | |
Cmo05g00293 | 169 | Gene3D | - | 11 | 126 | IPR035921 | - | |
Cmo05g00293 | 169 | TIGRFAM | V_ATP_synt_C: V-type ATPase, C subunit | 13 | 121 | IPR011555 | GO:0033179|GO:0046961|GO:1902600 | |
Cmo05g00293 | 169 | CDD | ATP-synt_Vo_c_ATP6C_rpt1 | 13 | 80 | - | - | |
Cmo05g00293 | 169 | SUPERFAMILY | F1F0 ATP synthase subunit C | 87 | 122 | IPR035921 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo05g00293 | Cmo12g00375 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g00293 | Cmo-Chr5:1273932 | Cmo09g00788 | Cmo-Chr9:4028195 | 1.82E-80 | dispersed | |
Cmo05g00293 | Cmo-Chr5:1273932 | Cmo05g00294 | Cmo-Chr5:1278471 | 1.85E-77 | tandem | |
Cmo12g00374 | Cmo-Chr12:2318825 | Cmo05g00293 | Cmo-Chr5:1273932 | 1.01E-79 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo05g00293 | K02155 | - | csin:114292490 | 219.935 |