Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00294 ATGAAGTCATTATGGTCCCAAGGATCAAGTGGCTTGATTGGCGAGCTCTCGAGGACACACTTGGATTATTCATTTAAGCCTGGGAAGACTCCAAGATTTTGGTTCGTGCTGTCAGATATGATTATAATTGGTCCTGGTGCTAAATGTGATTATGATTGGTATCGAACTTCAGCTCGATTCTGCATAATTCTTTTGGCATGGCTTAAATTTATGCCGCCCCTCAGGATCACTCTAGGTGTCATTTTCTTGCTCAATCGGACAAAGGAGATTGACTGCTTATGCGACTTGGAACACGACAAATGCAATATACGCACCGAAGCATCTGTTTGCAGTGTATGGATTGTTGCTTCACTCTTACCCACAATTAGGCACGTTTTTATAGGCTTCACTAGCGAGATGTGGGCCTGTTACTGGGCCACGTCTGCATGTTATTCTGATTGCGGCCCACTTTATATTCCTGTTTGGGCCTGTTGTGGGCCAGGGGAAGCACAGCTGGAGGACCCGATCCGAGGCGACAAAGGAGTGGGCTTATTTGAAGAAGAGGAAGAAGAGAGAGAGAGAGAGTTCGAGATCGGATCTAATCGGCGACCTTCTTCATCTTCACCATCGAACCCAGAAAAGATGTCGTCAACTTTCAGTGGCGATGAAACGGCACCTTTCTTCGGCTTCCTCGGCGCCGCTGCGGCCCTCGTCTTCTCCTGTATGGGAGCTGCTTATGGAACGGCGAAGAGCGGGGTGGGAGTTGCGTCTATGGGAGTAATGAGGCCTGAACTGGTGATGAAGTCTATTGTTCCGGTGGTCATGGCTGGAGTTTTGGGTATTTATGGTCTTATTATTGCTGTGATTATTAGTACAGGGATTAACCCCAAAGCCAAATCTTATTACCTTTTCGATGGCTACGCGCATCTCTCCTCTGGGCTTGCTTGTGGCCTTGCTGGTCTGTCCGCTGGCATGGCTATCGGGATCGTCGGCGATGCTGGTGTTAGAGCCAATGCCCAGCAGCCCAAGCTTTTCGTTGGGATGATTCTTATTCTAATTTTTGCTGAAGCGCTGGCACTGTATGGACTCATCGTCGGCATTATTCTGTCTTCCCGAGCTGAATTGATTTTGTACTCTTTGAGTAAATGGGTTGTTGTTATGATTTTTAAGCCTACTCTCCCCAATGTTCTTGTGAGGTGTGATTGCTTGCTATACCTCAGGGACCCTGTAGTAGCGTAG 1218 47.78 MKSLWSQGSSGLIGELSRTHLDYSFKPGKTPRFWFVLSDMIIIGPGAKCDYDWYRTSARFCIILLAWLKFMPPLRITLGVIFLLNRTKEIDCLCDLEHDKCNIRTEASVCSVWIVASLLPTIRHVFIGFTSEMWACYWATSACYSDCGPLYIPVWACCGPGEAQLEDPIRGDKGVGLFEEEEEEREREFEIGSNRRPSSSSPSNPEKMSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAELILYSLSKWVVVMIFKPTLPNVLVRCDCLLYLRDPVVA 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1278471 1282079 - CmoCh05G002940.1 Cmo05g00294 382429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00294 405 MobiDBLite consensus disorder prediction 194 212 - -
Cmo05g00294 405 SUPERFAMILY F1F0 ATP synthase subunit C 221 284 IPR035921 -
Cmo05g00294 405 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 220 328 IPR011555 GO:0033179|GO:0046961|GO:1902600
Cmo05g00294 405 Pfam ATP synthase subunit C 304 362 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cmo05g00294 405 Pfam ATP synthase subunit C 224 283 IPR002379 GO:0015078|GO:0033177|GO:1902600
Cmo05g00294 405 Gene3D - 218 368 IPR035921 -
Cmo05g00294 405 PRINTS Vacuolar ATP synthase 16kDa subunit signature 237 261 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cmo05g00294 405 PRINTS Vacuolar ATP synthase 16kDa subunit signature 263 287 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cmo05g00294 405 PRINTS Vacuolar ATP synthase 16kDa subunit signature 341 364 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cmo05g00294 405 PRINTS Vacuolar ATP synthase 16kDa subunit signature 314 340 IPR000245 GO:0033179|GO:0046961|GO:1902600
Cmo05g00294 405 CDD ATP-synt_Vo_c_ATP6C_rpt2 296 363 - -
Cmo05g00294 405 MobiDBLite consensus disorder prediction 179 212 - -
Cmo05g00294 405 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 210 366 - -
Cmo05g00294 405 CDD ATP-synt_Vo_c_ATP6C_rpt1 220 287 - -
Cmo05g00294 405 SUPERFAMILY F1F0 ATP synthase subunit C 294 364 IPR035921 -
Cmo05g00294 405 PANTHER V-TYPE PROTON ATPASE SUBUNIT C2 210 366 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00294 Cmo-Chr5:1278471 Cmo12g00374 Cmo-Chr12:2318825 1.17E-121 dispersed
Cmo05g00293 Cmo-Chr5:1273932 Cmo05g00294 Cmo-Chr5:1278471 1.85E-77 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00294 K02155 - dcr:108214040 277.715