Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00299 ATGGGGAGGCCTCGCTCATGCTTTCAAATAATCACATGTGGTAGCGATTCAAAGGACAAAGATGAGATCGATGTACTTGAGAGTAAGGATTCGAAAGACAAACGAGCCTGGAGTTTTCGTAAGAAATCTTCCCAGCATCGTGTGCTCAACAACACTGTAATCGCAGAAACTCCTGCTGCCGAGAAGGAGAATCTTGAAACTACTACCTTCGACTTCCAATCATCACCTAGCTCCACTGTTCCTGAGAAACCCACTGTAATACACTTCACTAATGAGGAGACCCAAGTGCCTAACGTTGAGAATCCTAAAGGATCTGATAAGGTGGATGATGCATCCGAAATTGAAAGTAAGGTTGATAGTGAGGTTGAGGAGGCTATTGTTGTTGTCATCCAGGCTGGTGTCAGGGGGCTCTTGGCACAGAGGGAGCTGCTTAAACTCAAGAATGTGATAAAGGTGCAAGCTGCTGTTCGTGGGTTCTTGGTAAGGAGACATGCTGTGGGAACACTTCGCTGTGCTCAAGCCATTGTCAAAATGCAAGCTATTGTACGTGCTCGTCGTGCTCGTCTCTCTCCTGAGGGATCGGCTCCAGATGAGCTGGATAAGAAGAATGAGAAGGAAAATCCTGGTTCAAAAATCATGGTAATTCTTCTGGTTTTCAAATCATGTCATCTTGAGAAACTGGACCCACCTTGGCAAGATTTAGATGTGAAGGGAGGGAGAACAAAATCCAATTTGAGATATATTTCAATTGAAAAGCTACTTAGCAATAATTTTGCCCGGCAGTTGTTGGAATCAACACCAAGGAACAACCCAATCAAAATCAAGTGTGATCCTTCCAAAAACGACTCTGCTTGGAAATGGTTGGAGCGCTGGATGGCTGTTTCATCATCGGATGTCTTGGAGCCGAAGGAAGAAGAAGTAGTCCCTGATCAATTGGAAAAAGAAACCGAGGAGCTGAAGAAAGAAGAATCAGACACTGAGCTAACGAAAGGAGAAATCGAGGAGTCTCATGCTGAGGATCGAATTGACTCAAAAGCTTTGTCTGAAACAGAAGATTTGAACTCCAGCACCATTAAATCAGTTTCACCATCTGAAAGTGAAGATTTAATGACTTATGACGCCGATAACTTACAATCTCAGACCAGCTGCTCTCCATCTTCATTAGTAAAAGATAATCTGGAGCAGCCTCTTCCAGAGACTGCTAGAACAGCTGAAGCTAAAGAGATATCAACTAAGGTTAGTTCTGTTCAAGATCAGAATATTCAGATGGATGATGTAGGTTTACAAACAGAGTCGAATCCTCTGAAAAGATTAGCCCCCGAGCAACTGGAGAATGAGGGTAAGAAATTTGTGCTTGGATTAAGGAAGGTGAACAATCCATCATTTATCAATGCCCAGGAAAAATTTGAACAGCTGAGTTCGCCATCATATTCAACTGGAACAATTAGATCAATGTATCAAGATGATGGAATTGAACCTCATTCTGAAACAGTATCATCTACAACAGATACTTTACCGAGAACGACGGAGTCATGTGCAGATGAAAATATTGTCCTTCCGGCATCTAGGATAGTTCAAGTTGGTGTCTCTGAATGTGGCACCGAGCTCTCTATTTCTTCCACCCTTGATTCACCTGATATATCCGAAGCAGGAGTGGCAGATCCACATTCAGACGATGTTTCAAAGAAAAGAGTCCAAGATCCTAGCAGTGATCTAATCACGGAAGTTGAAGTCAAGGGTTCTATTACTCCAATGCAAAAGGGTATCCAACTTCTTGTGGATCAACCAGAAGAAGTTAATGAATCTAATGGCCATTCCATCACTTCAGTTGCTGTTGTAGACTCTGCACCAGAAGTTAGTGAACCAAAGCTAGAGAGAAGTTCATCAGATCAACAGAGAGAAAAGGAGGCTGATACGGGTCATGATCATCAAACATATAGATCATCTCCAGAAGCTTCTCCAAGAAGCCATTTAAATGTTCCAGAATCTCAAGGAACACCGTCTAGTCAGGTATCAATAAAGGCTAAACGGGGTAAAACTGATAAGAACCAAAAGCAAAAGTCTCCATCAGCAGGAAAGAAATCACCATCCAGTTTAAATTGCAATTCTGGCACGAGGAGTAGTACAGATAATTCTTACAAAGATCAGAAGACTGGGAAGAGAAGAAACTCATTTGATTCAGCACGACCGGAAAATGTTGAAAAGGAATTAAAAGAGAGCATTAGTAGTAACTCTCTTCCTCACTTCATGCAAGCCACACAATCTGCTAGAGCCAAGGCCTCAACCAACTCCCCAAGATCAAGTCCGGATGTTCAAGATGGAGAATTATACATCAAGAAAAGGCATTCCTTACCTGCTGATGGCCGGCAAGGATCTCCACGCATTCAGCAAGAAAATGTGGCGAAGGTAAGCAGGCAACCACATGGTGGAAACAAATGCATCGTTCGTTTGCAGGTTAGGCTGTTCTTGTCTGAGGACTGTCCTTCCCAAGTGGGATTGGGTGCCCAAGATCACCTTCAAGCAAAGGCATCGTGGCTCTTGCATTCTACTGGATCAGGTTCTGATGACACTTTGCCTCCTGGATTTGAAGTAGCTCATTCAGAGAATCAGTCGCAGATTAAGCTCTCACAGATCCCTGTTAATCAATGGAGATGTCCGCCTAAGTTTGTGCTGAATTTGACGTGGCAAGTGGTTGTTGGTGAAGAAAGCCGAGAGGTAGTTGTTGAAAATCAGAGAGAGATGAGAGTTCTTGAAGCGGTTTATCCTCGGCCATCTGCAATTCCTCCTAACCCGTCCGTAGTAGCTGATTCAGAACGTGCCAATGTAGATGACAGTCGAACACCTCTGATTCCCATTACTCCTGTTGAAGATGAAGATGCAACAACCGAGACCTCGTCTGATTACGCAAGCCCCGCCTCTGTCCTTAATACGAGTGCACAGCCCTCCCCATTTACTCCTGCTGGTAGATCTACATCTCAACATGTTTTACTAAATGCGATGTCTTCTACTTCTAGTGTGAGTTCTATGGCTGGAATGGATCTTGGCAACAAACATGATGTAGTAGCTGCTGCATCCGCGGCACTCGGTGCACTTGTGAAGAGCAATGAGATAGGTAACTCGATCGACCGCGAATTACTTGTTAATATTCTCAACAATCCAAAAATGATCGAGCAGCTGGTTGTGGATTCTGGTGTCGTCACAAGCACTCAAAAGCCAATATCATCTCCTGACCCACAGCTTGTACATATGCCTATGTCCGAAACCAATGCCACCATTACGCCTCCTTTTTTCTCTCAACCAAATGGAGGGAGTGTAGCACCTGTCCCCAACGCACACCCTTCCTCAAGGGGTGTACCAGTTTCTTCTTCCCTGCCCTCCAATGGAGCCCCAATGAAGGACTTGAATTACTATAAAAGTTTGATTCAGCAACATGGAGGGGAGAGACAGGACGATCCCCCTCGGCAGCAGCAATTCCCGAACCGTCACAACCAACACTTGGGTACAAACCAAGAGTTCTTACAGAACCAGCCATCAAGAGAAGCAAAGTTCAAGATAATGAAACCCTGCATATATTTTAACAGCCCGAGAGGATGTCGACATGGAGCTAATTGTGCGTATCAGCACGACCCCGTGTTCCAGCAGAGAAGTAGTAGCGTGCCAGAAATGCCTACTAGCGCCAAAAGAACAAAGGTCGATAGAGAAATCAGCAGTTAA 3714 44.29 MGRPRSCFQIITCGSDSKDKDEIDVLESKDSKDKRAWSFRKKSSQHRVLNNTVIAETPAAEKENLETTTFDFQSSPSSTVPEKPTVIHFTNEETQVPNVENPKGSDKVDDASEIESKVDSEVEEAIVVVIQAGVRGLLAQRELLKLKNVIKVQAAVRGFLVRRHAVGTLRCAQAIVKMQAIVRARRARLSPEGSAPDELDKKNEKENPGSKIMVILLVFKSCHLEKLDPPWQDLDVKGGRTKSNLRYISIEKLLSNNFARQLLESTPRNNPIKIKCDPSKNDSAWKWLERWMAVSSSDVLEPKEEEVVPDQLEKETEELKKEESDTELTKGEIEESHAEDRIDSKALSETEDLNSSTIKSVSPSESEDLMTYDADNLQSQTSCSPSSLVKDNLEQPLPETARTAEAKEISTKVSSVQDQNIQMDDVGLQTESNPLKRLAPEQLENEGKKFVLGLRKVNNPSFINAQEKFEQLSSPSYSTGTIRSMYQDDGIEPHSETVSSTTDTLPRTTESCADENIVLPASRIVQVGVSECGTELSISSTLDSPDISEAGVADPHSDDVSKKRVQDPSSDLITEVEVKGSITPMQKGIQLLVDQPEEVNESNGHSITSVAVVDSAPEVSEPKLERSSSDQQREKEADTGHDHQTYRSSPEASPRSHLNVPESQGTPSSQVSIKAKRGKTDKNQKQKSPSAGKKSPSSLNCNSGTRSSTDNSYKDQKTGKRRNSFDSARPENVEKELKESISSNSLPHFMQATQSARAKASTNSPRSSPDVQDGELYIKKRHSLPADGRQGSPRIQQENVAKVSRQPHGGNKCIVRLQVRLFLSEDCPSQVGLGAQDHLQAKASWLLHSTGSGSDDTLPPGFEVAHSENQSQIKLSQIPVNQWRCPPKFVLNLTWQVVVGEESREVVVENQREMRVLEAVYPRPSAIPPNPSVVADSERANVDDSRTPLIPITPVEDEDATTETSSDYASPASVLNTSAQPSPFTPAGRSTSQHVLLNAMSSTSSVSSMAGMDLGNKHDVVAAASAALGALVKSNEIGNSIDRELLVNILNNPKMIEQLVVDSGVVTSTQKPISSPDPQLVHMPMSETNATITPPFFSQPNGGSVAPVPNAHPSSRGVPVSSSLPSNGAPMKDLNYYKSLIQQHGGERQDDPPRQQQFPNRHNQHLGTNQEFLQNQPSREAKFKIMKPCIYFNSPRGCRHGANCAYQHDPVFQQRSSSVPEMPTSAKRTKVDREISS 1237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1308611 1318565 + CmoCh05G002990.1 Cmo05g00299 382434

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00299 1237 SMART iq_5 122 144 IPR000048 GO:0005515
Cmo05g00299 1237 SMART iq_5 145 166 IPR000048 GO:0005515
Cmo05g00299 1237 MobiDBLite consensus disorder prediction 619 645 - -
Cmo05g00299 1237 MobiDBLite consensus disorder prediction 1115 1129 - -
Cmo05g00299 1237 ProSiteProfiles Zinc finger C3H1-type profile. 1183 1211 IPR000571 GO:0046872
Cmo05g00299 1237 MobiDBLite consensus disorder prediction 739 770 - -
Cmo05g00299 1237 MobiDBLite consensus disorder prediction 349 367 - -
Cmo05g00299 1237 MobiDBLite consensus disorder prediction 1096 1132 - -
Cmo05g00299 1237 MobiDBLite consensus disorder prediction 646 674 - -
Cmo05g00299 1237 MobiDBLite consensus disorder prediction 597 775 - -
Cmo05g00299 1237 ProSiteProfiles IQ motif profile. 145 174 IPR000048 GO:0005515
Cmo05g00299 1237 MobiDBLite consensus disorder prediction 689 712 - -
Cmo05g00299 1237 MobiDBLite consensus disorder prediction 298 367 - -
Cmo05g00299 1237 MobiDBLite consensus disorder prediction 1156 1171 - -
Cmo05g00299 1237 MobiDBLite consensus disorder prediction 299 348 - -
Cmo05g00299 1237 MobiDBLite consensus disorder prediction 928 990 - -
Cmo05g00299 1237 MobiDBLite consensus disorder prediction 1144 1171 - -
Cmo05g00299 1237 Pfam IQ calmodulin-binding motif 147 164 IPR000048 GO:0005515
Cmo05g00299 1237 Pfam IQ calmodulin-binding motif 126 143 IPR000048 GO:0005515
Cmo05g00299 1237 ProSiteProfiles IQ motif profile. 123 151 IPR000048 GO:0005515
Cmo05g00299 1237 PANTHER PROTEIN IQ-DOMAIN 32 1 798 - -
Cmo05g00299 1237 MobiDBLite consensus disorder prediction 552 570 - -
Cmo05g00299 1237 MobiDBLite consensus disorder prediction 538 570 - -
Cmo05g00299 1237 MobiDBLite consensus disorder prediction 713 738 - -
Cmo05g00299 1237 MobiDBLite consensus disorder prediction 964 990 - -
Cmo05g00299 1237 Gene3D - 122 172 - -
Cmo05g00299 1237 PANTHER IQ-DOMAIN 5-RELATED 1 798 - -
Cmo05g00299 1237 MobiDBLite consensus disorder prediction 1214 1237 - -
Cmo05g00299 1237 Coils Coil 312 332 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00299 - - - csv:101211948 1034.63
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g02013 Cmo05g00299 CCT
Cmo05g00299 Cmo12g00368 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00299 Cmo-Chr5:1308611 Cmo12g00368 Cmo-Chr12:2287882 0 dispersed
Cmo01g02013 Cmo-Chr1:14175837 Cmo05g00299 Cmo-Chr5:1308611 2.29E-144 wgd
Cmo12g00367 Cmo-Chr12:2280359 Cmo05g00299 Cmo-Chr5:1308611 0 wgd
Cmo03g00724 Cmo-Chr3:6214141 Cmo05g00299 Cmo-Chr5:1308611 3.75E-66 wgd
Cmo05g00299 Cmo-Chr5:1308611 Cmo07g00436 Cmo-Chr7:2002523 6.97E-61 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1072 Blo01g01588 Blo12g00893 Bda01g00499 Bda03g00278 Bpe02g00361 Bpe04g00234 Bma04g00236 . Cmo05g00299 Cmo12g00368 Cma01g01954 . Car01g01526 Car12g00395 . . Cpe07g00375 Bhi04g00241 . . . Hepe10g0136 . . . . . . . . . Cone4ag1957 Cone7ag1870 Cone17ag1390 Cone20ag0091 Lsi04g01722 Csa03g04258 Chy04g00437 Cme03g01895 . . . . . . . . Sed11g1080 Cmo01g02013 . Cma12g00418 Cma05g00294 Car05g00243 . Cpe11g00244 Cpe02g00087 Bhi09g02116 Tan01g4991 Cmetu03g0968 . Hepe01g1635 Mch11g0138 . Cla05g01894 Cam05g2029 Cec05g2038 Cco05g2095 Clacu05g2020 Cmu05g1900 Cre05g2024 Lsi08g01337 Csa02g02119 Chy03g01398 Cme04g00491
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007937 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 1 4 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9801 PF00612 IQ 0.0032 CL0220 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00299 Cmo_Chr05 FPKM 11.084793 12.735464 14.438609 12.943077 15.853682 16.222248 17.391813 25.662752 24.708279 25.617388