Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g00301 ATGGAAGCGGAGCGGCGAGAGGCAGAGATACACCGTACGGCGGCGGTTGAGGCGGAGGTGGAATCGAGGTTCCGTCGTATCTGCGTGTTCTGCGGCAGCAGCTCCGGGAAGAATCCGAGCTATCAAATTGCCGCAATTCAACTCGGAAAGCAACTGGTCGAAAGGAACATTGACCTTGTTTATGGCGGAGGAAGCATTGGGCTTATGGGCTTGGTTTCCCAAGCCGTCTACGACGGCGGACGCCACGTGTTAGGAGTGATCCCAAAATCTCTGATGCCAAGAGAGATCACTGGAGAGACAATTGGAGAAGTGAGAGCTGTATCTGGAATGCACCAACGCAAAGCTGAGATGGCGCGTCAAGCGGATGCATTTATTGCCTTGCCTGGTGGCTACGGAACACTGGAGGAACTGTTGGAAGTCATCACTTGGGCTCAATTGGGCATCCATGAAAAGCCGGTAGGGTTGCTGAACGTGGATGGGTATTACAACTCGCTCTTGTCGTTCATTGACAAAGCAGTTGACGAAGGCTTCGTGTCACCAGCTGCCCGTAGCATCATCGTTTCTGCCCAAACTGCCCATGAGCTCATCTCCAAGCTAGAGGAGTATGTCCCGAAGCATTCTAGCGTAGCGAAACTGAGCTGGGAAATGGATCAACAACTCGGTTATACAATAAAGTCAGACATTTCTCGTTGA 693 51.95 MEAERREAEIHRTAAVEAEVESRFRRICVFCGSSSGKNPSYQIAAIQLGKQLVERNIDLVYGGGSIGLMGLVSQAVYDGGRHVLGVIPKSLMPREITGETIGEVRAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQLGIHEKPVGLLNVDGYYNSLLSFIDKAVDEGFVSPAARSIIVSAQTAHELISKLEEYVPKHSSVAKLSWEMDQQLGYTIKSDISR 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1329520 1331109 + CmoCh05G003010.1 Cmo05g00301 382436

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g00301 230 PANTHER LOG FAMILY PROTEIN YJL055W 17 227 - -
Cmo05g00301 230 SUPERFAMILY MCP/YpsA-like 23 202 - -
Cmo05g00301 230 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE 17 227 - -
Cmo05g00301 230 Gene3D - 13 201 - -
Cmo05g00301 230 Pfam Possible lysine decarboxylase 69 198 IPR031100 -
Cmo05g00301 230 TIGRFAM TIGR00730: TIGR00730 family protein 26 202 IPR005269 GO:0009691|GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g00301 K22522 LOG; cytokinin riboside 5'-monophosphate phosphoribohydrolase [EC:3.2.2.-] - csv:101211714 400.208
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g02024 Cmo05g00301 CCT
Cmo05g00301 Cmo12g00365 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00301 Cmo-Chr5:1329520 Cmo06g00375 Cmo-Chr6:1816139 3.85E-119 dispersed
Cmo09g00985 Cmo-Chr9:5227339 Cmo05g00301 Cmo-Chr5:1329520 1.98E-07 dispersed
Cmo01g02024 Cmo-Chr1:14226116 Cmo05g00301 Cmo-Chr5:1329520 2.34E-112 wgd
Cmo12g00365 Cmo-Chr12:2261368 Cmo05g00301 Cmo-Chr5:1329520 1.67E-151 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1089 Blo01g01592 . Bda01g00492 . Bpe02g00355 Bpe04g00242 Bma04g00242 Bma01g02363 Cmo05g00301 Cmo12g00365 Cma01g01966 . Car01g01536 Car12g00392 . . Cpe07g00372 Bhi04g00161 . . . Hepe10g0139 . . Cla08g01434 Cam08g1913 Cec08g1489 Cco08g1626 Clacu08g1604 . Cre08g1389 . . Cone17ag1395 . Lsi04g01732 Csa03g04269 Chy04g00426 Cme03g01892 . Blo18g00781 . Bda01g01529 Bpe02g01725 . Bma01g00729 . . Cmo01g02024 . Cma12g00414 Cma05g00298 Car05g00246 . Cpe11g00247 . Bhi09g02098 Tan01g5006 Cmetu04g2830 . Hepe01g1624 Mch11g0128 . Cla05g01879 Cam05g2011 Cec05g2022 Cco05g2080 Clacu05g2004 Cmu05g1885 Cre05g2006 Lsi08g01333 Csa02g02122 Chy03g01396 Cme04g00479
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000072 8 13 9 10 10 8 15 8 8 8 8 8 15 8 9 12 8 3 15 8 9 9 9 9 7 7 8 15 16 7 287
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g00301 Cmo_Chr05 FPKM 3.888506 4.133889 3.584113 3.489843 3.598886 3.635572 3.361094 3.029505 2.851521 2.723518